CX070008

Overview
NameCX070008
Unique NameCX070008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070008 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.511e-11
Identity = 45/136 (33.09%), Postives = 70/136 (51.47%), Query Frame = 3
Query:   18 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS*KIYAERDGR 425
            GH + I S+  SP+G ++AS   D  I++W    G+C   L GH+  +  +A+S + S L S S D T+KLWDV           +SG    + LKTL   S  V+   F+  + L  +G+  + S KI+  + G+
Sbjct:   37 GHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWDV-----------RSG----KCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDE-SVKIWEVKTGK 156          
BLAST of CX070008 vs. ExPASy Swiss-Prot
Match: MDV1_VANPO (Mitochondrial division protein 1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=MDV1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.891e-11
Identity = 43/128 (33.59%), Postives = 65/128 (50.78%), Query Frame = 3
Query:   69 MASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKSTPVYSLQFSRRNLLFAAGALSKTS*KIYAERDGRVQQQQCRQS 452
            +A+G  DG + +WD+ SG+ V   MGHT+ V +L +  +   L SGS D +++ WD+ T                 SL  L    +PVYS+ F   NL+ A G   +TS K+Y  +D +  Q +C  S
Sbjct:  571 LATGTRDGLVRLWDMRSGKVVRTFMGHTNAVTSLKF--DSYNLISGSLDKSIRTWDLRTG----------------SLSDLFAYDSPVYSIDFDSSNLVSAIG---ETSFKVYNRKDDK--QWECVNS 675          
BLAST of CX070008 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.694e-11
Identity = 36/102 (35.29%), Postives = 52/102 (50.98%), Query Frame = 3
Query:   18 GHRSMILSLAMSPDGRYMASGDEDGTIMMWDLASGRCVTPLMGHTSCVWTLAYSCEGSLLASGSADCTVKLWDVTTSTKVLKTEEKSGTNRLRSLKTLPTKS 323
            GH   +  +  SPDG+++ +  ED TI +WDL  G+       HT  V  + +     LLASGS+D TV+ WD+ T   V  T    G + +RS+   P  S
Sbjct:  141 GHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLASGSSDRTVQFWDLETFQLVSST--SPGASAVRSISFHPDGS 240          
The following BLAST results are available for this feature:
BLAST of CX070008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
WDR5B_RAT4.511e-1133.09WD repeat-containing protein 5B OS=Rattus norvegic... [more]
MDV1_VANPO5.891e-1133.59Mitochondrial division protein 1 OS=Vanderwaltozym... [more]
KTNB1_STRPU7.694e-1135.29Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C03-E6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070008 ID=CX070008; Name=CX070008; organism=Citrus sinensis; type=EST; length=586bp
GTGTCCGGATTTTTATTGGACATAGGAGTATGATTTTGTCATTAGCAATG
TCACCCGATGGTCGGTACATGGCATCTGGTGATGAAGATGGCACGATCAT
GATGTGGGATCTTGCTAGTGGTCGTTGTGTCACCCCTTTGATGGGTCACA
CCTCATGCGTGTGGACACTAGCCTACAGTTGTGAAGGTTCGCTTCTCGCA
TCTGGATCTGCTGATTGCACCGTAAAATTATGGGATGTCACTACTAGCAC
GAAGGTGCTGAAAACCGAAGAGAAGAGTGGAACAAACAGACTGAGATCGT
TGAAAACTCTGCCAACCAAGTCGACGCCAGTCTATTCTTTACAGTTTTCT
CGAAGAAATCTCCTATTTGCTGCGGGGGCTCTCTCAAAAACTTCATAGAA
GATTTATGCTGAGCGGGATGGGCGAGTTCAACAACAGCAGTGCAGGCAAA
GTCTTGGATGTAAAATCAGAATCCTTTGTCCCCATTTGGGCTTGATAACT
TTCTGTGTTCTATATTTGTAACACGTATTTAAGAAACGAGAAAGATGATT
TGATGATTTTGCTAGTCAAAAAAAAAAAAAAAACCT
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