CX070006

Overview
NameCX070006
Unique NameCX070006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:266..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.826e-35
Identity = 86/199 (43.22%), Postives = 116/199 (58.29%), Query Frame = -1
Query:  181 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALA-AVYHQIVIRAIPFKSR 771
            I+  FG  I  +V C   ISGGHINPAVT  ++  RK+S+ ++VFY+  QCLGA+ GAG++           +GG      HG  T G GL  E+I TF LV+T+F++ D+KR    + V     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP IGA LA A+Y  +    +  K R
Sbjct:   76 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPP---NVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYVFCPDVELKRR 264          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.568e-34
Identity = 85/199 (42.71%), Postives = 116/199 (58.29%), Query Frame = -1
Query:  181 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALA-AVYHQIVIRAIPFKSR 771
            I+  FG  I  +V C   ISGGHINPAVT  ++  RK+S+ ++VFY++ QCLGA+ GAG++           +GG      HG  T G GL  E+I TF LV+T+F++ D+KR    + V     L IGF+V + HL  I  TG  +NPARS G A+I      W +HWI+WVGP +GA LA A+Y  +    +  K R
Sbjct:   73 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGILYLVTPP---SVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WANHWIYWVGPIMGAVLAGALYEYVFCPDVELKRR 261          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.568e-34
Identity = 83/189 (43.92%), Postives = 112/189 (59.26%), Query Frame = -1
Query:  208 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 771
            I+  FG  I  +V C   ISGGHINPAVT  ++  RK+S+ ++VFY+  QCLGA+ GAG++           +GG      HG  T G GL  E+I TF LV+T+F++ D+KR    + V     L IGF+V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP IGA LA   ++ V
Sbjct:   73 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPP---SVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQPA_RANES (Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.174e-33
Identity = 87/224 (38.84%), Postives = 127/224 (56.70%), Query Frame = -1
Query:  205 FLYITVLTVMGVS-----KSNTKCSTVG----IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 849
            F++I++   +G +     K+N    TVG    I  ++ AFG  I  +      +SG H+NPAVT G LL+ ++S+ +AV Y++ QCLGAV    ++ G   +   E    G N ++ G + G GLG EI+ TF LV  V + TD +R+     V    PL IG +V L HL  I  TG G+NPARS G+A++  K+  +  HWIFWVGP IG A AA+ +  ++
Sbjct:   24 FVFISIGAALGFNFPIEEKAN---QTVGRSQDIVKVSLAFGISIATMAQSVGHVSGAHLNPAVTLGCLLSCQISILKAVMYIIAQCLGAVVATAILSGI--TSGLENNSLGLNGLSPGVSAGQGLGVEILVTFQLVLCVVAVTDRRRHDVSGSV----PLAIGLSVALGHLIAIDYTGCGMNPARSFGSAVL-TKNFTY--HWIFWVGPMIGGAAAAIIYDFIL 235          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 8.260e-33
Identity = 80/189 (42.33%), Postives = 111/189 (58.73%), Query Frame = -1
Query:  208 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHG-YTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 771
            I+  FG  I  +V C   ISGGHINPAVT  ++  R++S+ ++VFY+  QCLGA+ GAG++           +GG      HG  + G GL  E+I TF LV+T+F++ D+KR    + V     L IG +V + HL  I  TG  +NPARS G A+I      W++HWI+WVGP IGA LA   ++ V
Sbjct:   73 ISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGILYLVTPP---SVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKR----TDVTGSIALAIGISVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGGLYEYV 251          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQP5_PIG (Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.403e-32
Identity = 79/186 (42.47%), Postives = 110/186 (59.14%), Query Frame = -1
Query:  217 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYH 771
            IA AFG  I  L      +SGGHINPA+T  LL+  ++SL RAVFY+V Q +GA+ GAG++ G         L    N + +  T G  +  E+I TF L   +FS+TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A++ N+      HW+FWVGP +GAA+AA+ +
Sbjct:   45 IALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAVFYVVAQLVGAIAGAGILYGLAPGNARGNL--AVNSLNNNTTPGQAVVVEMILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAAVAAILY 221          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.657e-31
Identity = 80/193 (41.45%), Postives = 112/193 (58.03%), Query Frame = -1
Query:  205 GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 783
            G+ G A AFG     LV     +SGGHINPA+T   LLA +LSL RA+ Y++ Q LGA+ GAGV+ G   +     LG  A   + G   G G   E++ T   +  VF++ D + + R    P  A LP+GF++ L HL  IP TG G+NPARS   A+I      + +HW+FW GP +GAALAA+ +++ +
Sbjct:   40 GVLGSALAFGLAQATLVQALGHVSGGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAVRGTLGLSALHPSVG--PGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVITRN---FTNHWVFWAGPLLGAALAALLYELAL 223          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQP5_SHEEP (Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.920e-31
Identity = 77/186 (41.40%), Postives = 110/186 (59.14%), Query Frame = -1
Query:  217 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYH 771
            I+ AFG  I  +      +SGGH+NPA+T  LL+  ++SL RAVFY+V Q +GA+ GA ++ G         L    N + +  T G  + AE+I TF L   VFS+TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A+I ++  +   HW+FWVGP +GAA AA+ +
Sbjct:   45 ISLAFGLAIGTMAQALGPVSGGHMNPAITLALLVGNQISLLRAVFYLVAQLVGAIAGAAILYGLAPYNARSNL--AVNALNNNTTAGQAVVAEMILTFQLALCVFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVIMSRFSS--AHWVFWVGPIVGAATAAIIY 221          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQP5_MOUSE (Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.920e-31
Identity = 75/186 (40.32%), Postives = 108/186 (58.06%), Query Frame = -1
Query:  217 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYH 771
            I+ AFG  I  L      +SGGHINPA+T  LL+  ++SL RA+FY+  Q +GA+ GAG++           L    N +++  T G  +  E+I TF L   +FS+TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A++ N+      HW+FWVGP +GA LAA+ +
Sbjct:   45 ISIAFGLAIGTLAQALGPVSGGHINPAITLALLIGNQISLLRAIFYVAAQLVGAIAGAGILYWLAPGNARGNL--AVNALSNNTTPGKAVVVELILTFQLALCIFSSTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PSHWVFWVGPIVGAVLAAILY 221          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.920e-31
Identity = 76/186 (40.86%), Postives = 108/186 (58.06%), Query Frame = -1
Query:  217 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAP-LPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYH 771
            IA AFG  I  L      +SGGHINPA+T  LL+  ++SL RA FY+  Q +GA+ GAG++ G         L    N + +  T+G  +  E+I TF L   +F++TD++R +     P+ +P L IG +V L HL  I  TG  +NPARS G A++ N+      HW+FWVGP +GA LAA+ +
Sbjct:   45 IALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNL--AVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTS-----PVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFS--PAHWVFWVGPIVGAVLAAILY 221          
The following BLAST results are available for this feature:
BLAST of CX070006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
AQP4_NOTAL8.826e-3543.22Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]
AQP4_MOUSE2.568e-3442.71Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_DIPME2.568e-3443.92Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
AQPA_RANES2.174e-3338.84Aquaporin FA-CHIP OS=Rana esculenta GN=AQPA PE=2 S... [more]
AQP4_BOVIN8.260e-3342.33Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
AQP5_PIG2.403e-3242.47Aquaporin-5 OS=Sus scrofa GN=AQP5 PE=2 SV=1[more]
MIP_CHICK2.657e-3141.45Lens fiber major intrinsic protein OS=Gallus gallu... [more]
AQP5_SHEEP5.920e-3141.40Aquaporin-5 OS=Ovis aries GN=AQP5 PE=2 SV=1[more]
AQP5_MOUSE5.920e-3140.32Aquaporin-5 OS=Mus musculus GN=Aqp5 PE=2 SV=1[more]
AQP5_HUMAN5.920e-3140.86Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14C02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C02-E4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070006 ID=CX070006; Name=CX070006; organism=Citrus sinensis; type=EST; length=849bp
CTTTTTTTTGAATCCTCCAATCAAAAGCTTAAAAAAAAAAAATACAGCAA
TGCTAGATAATTTACACACAATTAATTAACATCTTAAACAGTTAAACACC
AAATGCACATAAACAAAAAGACACGACAAAGAAGATACAAATTAAAAAAA
AAAAAGGTCCATCAGTGAACTCTCTTAAGCCCTGGACTTGAAGGGAATGG
CCCTGATGACTATCTGGTGGTACACAGCAGCCAGTGCAGCTCCAATGAAT
GGTCCAACCCAGAAGATCCAATGGTCATCCCAGGCATGGTCTTTGTTGAA
GATGATGGCAGCTCCAAGACTCCTAGCTGGGTTGATGCCAGTTCCTGTGA
TGGGGATGGTGGCCAGGTGGACCAAGAAAACAGCAAATCCAATGGGGAGG
GGGGCCAAAATAGGGACATGAGAGTCTCTGGCGTTTCTCTTCGCATCAGT
GGCAGAGAAGACAGTGTAAACAAGAACAAAGGTTCCAATAATCTCAGCAC
CAAGACCATCACCCTTGGTGTAGCCGTGAGCAACAACATTGGCTCCACCA
CCCAACCTCTCGTAGTTCTTTGAACCTTCGAATCCCTTGACAACACCAGC
ACCACAGACAGCACCAAGGCACTGCATGACCATGTAGAAGACAGCCCTTG
TCAGGGAAAGCTTCCTCGCTAGCAGCAGACCGAAGGTCACTGCTGGGTTG
ATGTGTCCTCCTGAGATACCAGCAGTGCAGTAAACAAGCGCAAAGATCAT
GCCACCAAAGGCCCAAGCAATTCCTTGGATACCGACAGTGGAGCACTTGG
TGTTAGACTTAGAGACACCCATGACAGTCAAGACAGTGATGTAGAGGAA
back to top