CX070006

Overview
NameCX070006
Unique NameCX070006
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8852 contig Csv1_Contig8852:266..1113. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.277e-25
Identity = 70/189 (37.04%), Postives = 99/189 (52.38%), Query Frame = -1
Query:  205 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 771
            +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  YM  Q LGAV GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP IG  L ++ +  ++
Sbjct:   44 VALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHPGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRLGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FTNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.179e-25
Identity = 77/225 (34.22%), Postives = 116/225 (51.56%), Query Frame = -1
Query:  199 FLYITVLTVMGVSK--SNTKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKG----DGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAA-VYHQIVIRA 849
            F++  V + +  +K  S+      G+  +A A    +F  V   A +SGGH+NPAVT GL +   +++   +FY + QCLG+     ++K          +  G +V  HG   G     G+  EII TF LVYTV+ +A D K+ +    + ++AP+ IGF V    LA  P +G  +NPARS G A+       +  +WI+W GP IG ALA  +Y  + I A
Sbjct:   31 FVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLK---------FVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGD---FSQNWIYWAGPLIGGALAGFIYGDVFITA 239          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: MIP_RAT (Lens fiber major intrinsic protein (Fragment) OS=Rattus norvegicus GN=Mip PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.846e-25
Identity = 69/189 (36.51%), Postives = 99/189 (52.38%), Query Frame = -1
Query:  205 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 771
            +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  Y+  Q LGAV GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP IG  L ++ +  ++
Sbjct:   42 VALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVGPIIGGGLGSLLYDFLL 221          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: MIP_MOUSE (Lens fiber major intrinsic protein OS=Mus musculus GN=Mip PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.846e-25
Identity = 69/189 (36.51%), Postives = 99/189 (52.38%), Query Frame = -1
Query:  205 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 771
            +A AFG  +  LV     ISG H+NPAVTF  L+  ++SL RA  Y+  Q LGAV GA V+  +  +    R     N +  G + G     EI  T   V  +F+  D +RN R   V     L +GF++ L HL  +  TG G+NPARS   AI+      + +HW++WVGP IG  L ++ +  ++
Sbjct:   44 VALAFGLALATLVQTVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYIAAQLLGAVAGAAVL--YSVTPPAVRGNLALNTLHAGVSVGQATTVEIFLTLQFVLCIFATYDERRNGRMGSV----ALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRN---FSNHWVYWVGPIIGGGLGSLLYDFLL 223          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQY1_YEAST (Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.846e-25
Identity = 68/181 (37.57%), Postives = 95/181 (52.49%), Query Frame = -1
Query:  229 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALA 771
            IA  FG  +   ++C AG+SGG +NPAV+  L LAR +S TR V   V Q +  +   G        +        AN +  G ++  GL  E+ GT +L  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARSLGAA+       +  HWI+W+GP +G+ LA
Sbjct:   94 IAIGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAVSPTRCVVMWVSQIVAGMAAGGAASAMTPGEVL-----FANSLGLGCSRTRGLFLEMFGTAILCLTVLMTAVEKRETN-----FMAALPIGISLFIAHVALTAYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGSILA 262          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: AQY2_YEAST (Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.717e-25
Identity = 68/181 (37.57%), Postives = 92/181 (50.83%), Query Frame = -1
Query:  229 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALA 771
            IA  FG  +   ++C AG+SGG +NPAV+  L LAR +S  R V     Q +  +   G        K         N +  G ++  GL  E+ GT VL  TV      KR         +A LPIG ++F+ H+A    TGTG+NPARSLGAA+       +  HWI+W+GP +GA LA
Sbjct:   93 IALGFGFSVMFSIWCFAGVSGGALNPAVSLSLCLARAISPARCVVMWFPQIIAGMAAGGAASAMTPGKVLF-----TNALGLGCSRSRGLFLEMFGTAVLCLTVLMTAVEKRETN-----FMAALPIGISLFMAHMALTGYTGTGVNPARSLGAAVAARYFPHY--HWIYWIGPLLGAFLA 261          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.854e-25
Identity = 69/193 (35.75%), Postives = 107/193 (55.44%), Query Frame = -1
Query:  208 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLG----AEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIV 771
            IA AF   +F  V   A ISGGH+NPAVTFG  +   ++L R + Y++ Q LG++  + ++     S          +V A G ++G G+G     EI+ TF LVYTV+ +A D K+     ++ I+AP+ IGF V    L     TG  +NPA S G A++     +W +HW++W GP IG  +A + ++++
Sbjct:   63 IAHAFA--LFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTAS----------SVPAFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 236          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.339e-25
Identity = 71/196 (36.22%), Postives = 106/196 (54.08%), Query Frame = -1
Query:  205 IAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGA------EIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 771
            +A A    +FA V  +  +SGGH+NPAV+FG L+  ++S+ RAV+Y + Q LG++  A V++               N+   G+    G+G       E++ TF L+YTV+ +A D KR A    V  +APL IG  V    L   P  G  +NPA + G +++      W  HWIFWVGP +GAALAA+ ++  +
Sbjct:   61 LALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN-----------NMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVGPLLGAALAALVYEYAV 238          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.339e-25
Identity = 75/217 (34.56%), Postives = 113/217 (52.07%), Query Frame = -1
Query:  205 FLYITVLTVMGVSKSNTKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVFSAT-DAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 849
            F++    +++ + K     ST G +  ++ A    +   V     ISGGH+NPA+TFG LL  +LSL RA+FY + Q LGAV    +++   G     R  G A  +A G      +  E   TF L+Y  ++   D KR     HV  +APL +GF +    LA  P  G G+NPAR  G A++      W  HW++W+GPF+GA LA + ++ ++
Sbjct:   39 FVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGGM---RPPGFA--LASGVGDWHAVLLEATMTFGLMYAYYATVIDPKR----GHVGTIAPLAVGFLLGANMLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFVGAGLAGLLYEYLV 243          
BLAST of CX070006 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.280e-25
Identity = 75/220 (34.09%), Postives = 113/220 (51.36%), Query Frame = -1
Query:  205 FLYITVLTVMGVSKSNTKCSTV----GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAVCGAGVVKGFEGSKNYERLGGGANVVAHGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDHAWDDHWIFWVGPFIGAALAAVYHQIVI 849
            F++    +V+ + K     ST+    G+  +A A    +   V     +SGGH+NPAVTFG L+  ++SL RAV Y   Q LGAV    +++   G     R  G A  +A G   G  +  E + TF  VY  + +  D KR     H+  +APL +GF +    LA  P  G G+NPAR  G A++      W  HW++W+GPF+GA LA + ++ ++
Sbjct:   40 FVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGG---ARPPGFA--LASGVGDGHAVLLEAVMTFGFVYAYYATVVDPKR----GHLGTIAPLAVGFLLGANVLAGGPFDGAGMNPARVFGPALV---GWRWRHHWVYWLGPFLGAGLAGLVYEYLL 247          
The following BLAST results are available for this feature:
BLAST of CX070006 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 196
Match NameE-valueIdentityDescription
MIP_CANFA1.277e-2537.04Lens fiber major intrinsic protein OS=Canis famili... [more]
TIP_ANTMA2.179e-2534.22Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
MIP_RAT2.846e-2536.51Lens fiber major intrinsic protein (Fragment) OS=R... [more]
MIP_MOUSE2.846e-2536.51Lens fiber major intrinsic protein OS=Mus musculus... [more]
AQY1_YEAST2.846e-2537.57Aquaporin-1 OS=Saccharomyces cerevisiae GN=AQY1 PE... [more]
AQY2_YEAST3.717e-2537.57Aquaporin-2 OS=Saccharomyces cerevisiae GN=AQY2 PE... [more]
TIP1_MEDTR4.854e-2535.75Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIPA_PHAVU6.339e-2536.22Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP31_ORYSJ6.339e-2534.56Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP32_MAIZE8.280e-2534.09Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C02-E4-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070006 ID=CX070006; Name=CX070006; organism=Citrus sinensis; type=EST; length=849bp
CTTTTTTTTGAATCCTCCAATCAAAAGCTTAAAAAAAAAAAATACAGCAA
TGCTAGATAATTTACACACAATTAATTAACATCTTAAACAGTTAAACACC
AAATGCACATAAACAAAAAGACACGACAAAGAAGATACAAATTAAAAAAA
AAAAAGGTCCATCAGTGAACTCTCTTAAGCCCTGGACTTGAAGGGAATGG
CCCTGATGACTATCTGGTGGTACACAGCAGCCAGTGCAGCTCCAATGAAT
GGTCCAACCCAGAAGATCCAATGGTCATCCCAGGCATGGTCTTTGTTGAA
GATGATGGCAGCTCCAAGACTCCTAGCTGGGTTGATGCCAGTTCCTGTGA
TGGGGATGGTGGCCAGGTGGACCAAGAAAACAGCAAATCCAATGGGGAGG
GGGGCCAAAATAGGGACATGAGAGTCTCTGGCGTTTCTCTTCGCATCAGT
GGCAGAGAAGACAGTGTAAACAAGAACAAAGGTTCCAATAATCTCAGCAC
CAAGACCATCACCCTTGGTGTAGCCGTGAGCAACAACATTGGCTCCACCA
CCCAACCTCTCGTAGTTCTTTGAACCTTCGAATCCCTTGACAACACCAGC
ACCACAGACAGCACCAAGGCACTGCATGACCATGTAGAAGACAGCCCTTG
TCAGGGAAAGCTTCCTCGCTAGCAGCAGACCGAAGGTCACTGCTGGGTTG
ATGTGTCCTCCTGAGATACCAGCAGTGCAGTAAACAAGCGCAAAGATCAT
GCCACCAAAGGCCCAAGCAATTCCTTGGATACCGACAGTGGAGCACTTGG
TGTTAGACTTAGAGACACCCATGACAGTCAAGACAGTGATGTAGAGGAA
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