CX070005

Overview
NameCX070005
Unique NameCX070005
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2984 contig Csv1_Contig2984:330..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.435e-18
Identity = 44/73 (60.27%), Postives = 50/73 (68.49%), Query Frame = 1
Query:   88 LQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            LQISG+R +EKEDKNDTWHRVERSSG F R FRLP+N K+DQ+KASME+G                 AI ISG
Sbjct:    2 LQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.214e-16
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 237
            ETPE HV   D+PGL              L++SG+RK E+E K D WHRVERS G F R+FRLP+NV +D +KA +E+G
Sbjct:   73 ETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENG 151          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.070e-16
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 237
            ETPE HV   D+PGL              L++SG+RK E++ K D WHRVERS G F R+F+LP+NV +D +KA ME+G
Sbjct:   81 ETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENG 159          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.099e-15
Identity = 47/105 (44.76%), Postives = 56/105 (53.33%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKE--DKNDT-WHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXXAIAISG 306
            ETP AHVF ADLPG+              L ISG+R  E++   KND  WH VERSSG F RRFRLP   ++DQ+ ASM++G                 AI ISG
Sbjct:   46 ETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.698e-15
Identity = 37/79 (46.84%), Postives = 49/79 (62.03%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 237
            ET E H    D+PGL              L++SG+RK E+E K D WHRVERS G F R+F+LP+NV M+ +KA +E+G
Sbjct:   77 ETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENG 155          
BLAST of CX070005 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12
Identity = 35/79 (44.30%), Postives = 45/79 (56.96%), Query Frame = 1
Query:    1 ETPEAHVFKADLPGLXXXXXXXXXXXXXXLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 237
            ET  AHVF AD+PG+              L+ISGQR    E+K + WHRVERSS  F R  RLP N   D + A++++G
Sbjct:   76 ETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNG 154          
The following BLAST results are available for this feature:
BLAST of CX070005 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HSP12_SOYBN6.435e-1860.27Class I heat shock protein (Fragment) OS=Glycine m... [more]
HSP41_SOYBN1.214e-1650.6322.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA2.070e-1649.3722.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS166_ORYSJ5.099e-1544.7616.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH8.698e-1546.8422.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ5.277e-1244.3018.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C01-E2-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070005 ID=CX070005; Name=CX070005; organism=Citrus sinensis; type=EST; length=425bp
GAAACCCCGGAAGCCCACGTGTTCAAGGCCGATCTTCCGGGGCTGAGGAA
AGAGGAAGTGAAGGTCGAGGTCGAAGATGACAGGGTGCTTCAGATAAGCG
GTCAGAGGAAGATTGAGAAGGAAGACAAGAACGACACGTGGCATCGCGTT
GAGCGTAGCAGTGGCATGTTCTCAAGGAGGTTCAGGCTGCCTGAGAATGT
GAAGATGGATCAGATTAAGGCTTCCATGGAGAGTGGTGTGCTCACTGTTA
CTGTTCCGAAAGTGGAGGTGACCAAACCTGATGTTAAGGCTATCGCAATC
TCTGGTTAAACCAGTGTCTGTCTGTATGTCTTTATGCATACTTGTATAAG
GATGCTGTGATGTTTTGGTTTTGTAATTTGCTTGCATGAATGTTTGTGTA
ATGGTATTCTGTTCATTTGAGCTTT
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