CX070004

Overview
NameCX070004
Unique NameCX070004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2984 contig Csv1_Contig2984:327..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.248e-25
Identity = 59/103 (57.28%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPE HVFK DLPGL             VLQISG+R +EKEDKND WHR+ERSSG F RRFRLPEN KMDQ+KASME+G                K+I ISG
Sbjct:   52 KETPEPHVFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVKKPEVKSIEISG 154          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.400e-24
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ET EAHVFKADLPG+             VL+ISG+R +EKE+K DTWHRVERSSG FSR+FRLPENVKMDQ+KASME+G
Sbjct:   51 KETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENG 130          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.400e-24
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ET EAHVFKADLPG+             VL+ISG+R +EKE+K DTWHRVERSSG FSR+F+LPENVKMDQ+KASME+G
Sbjct:   53 KETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENG 132          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.400e-24
Identity = 60/103 (58.25%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPE+HVFKADLPG+             VL ISGQR  EKEDKND WHRVERSSG F RRFRLPEN K+DQ+KASME+G                KAI ISG
Sbjct:   47 KETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 3.134e-24
Identity = 54/80 (67.50%), Postives = 61/80 (76.25%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            RETPEAHVFKADLPGL             +LQISG+R  E E+KND WHRVERSSG F+RRFRLPEN KM++IKASME+G
Sbjct:   55 RETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENG 134          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.982e-24
Identity = 53/80 (66.25%), Postives = 61/80 (76.25%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPEAHVFKADLPG+             VL+ISGQR  EKE+KNDTWHRVERSSG F R+FRLPEN K+DQ+KA ME+G
Sbjct:   60 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENG 139          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.982e-24
Identity = 59/103 (57.28%), Postives = 65/103 (63.11%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPE+HVFKADLPG+             VL ISGQR  EKEDKND WHRVERSSG F RRFRLPEN K+DQ+KA ME+G                KAI ISG
Sbjct:   48 KETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.556e-23
Identity = 58/103 (56.31%), Postives = 65/103 (63.11%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPE+HVFKADLPG+             VL ISGQR  EKEDKND WHRVERSSG F RRFRLPEN K+DQ+KA +E+G                KAI ISG
Sbjct:   48 KETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 2.653e-23
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            RETPEAHVFKAD+PGL             +LQISG+R  E E+K+DTWHRVERSSG F RRFRLPEN K++++KASME+G
Sbjct:   54 RETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENG 133          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.526e-23
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ET EAHV KAD+PGL             VLQISG+R +EKEDKNDTWHRV+RSSG F RRFRLPEN K++Q+KA ME+G
Sbjct:   52 KETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENG 131          
The following BLAST results are available for this feature:
BLAST of CX070004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HSP11_SOLLC8.248e-2557.2817.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HS17A_ARATH2.400e-2467.5017.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS178_ARATH2.400e-2466.2517.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16C_ORYSJ2.400e-2458.2516.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS17C_ARATH3.134e-2467.5017.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP11_CHERU6.982e-2466.2518.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS16B_ORYSJ6.982e-2457.2816.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ1.556e-2356.3116.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP17_ARATH2.653e-2363.7517.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP15_SOYBN4.526e-2363.7517.6 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C01-E2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070004 ID=CX070004; Name=CX070004; organism=Citrus sinensis; type=EST; length=444bp
TACCGCGGCCCCCCCCAAAGCTCAAATGAACAGAATACCATTACACAAAC
ATTCATGCAAGCAAATTACAAAACCAAAACATCACAGCATCCTTATACAA
GTATGCATAAAGACATACAGACAGACACTGGTTTAACCAGAGATTGCGAT
AGCCTTAACATCAGGTTTGGTCACCTCCACTTTCGGAACAGTAACAGTGA
GCACACCACTCTCCATGGAAGCCTTAATCTGATCCATCTTCACATTCTCA
GGCAGCCTGAACCTCCTTGAGAACATGCCACTGCTACGCTCAACGCGATG
CCACGTGTCGTTCTTGTCTTCCTTCTCAATCTTCCTCTGACCGCTTATCT
GAAGCACCCTGTCATCTTCGACCTCGACCTTCACTTCCTCTTTCCTCAGC
CCCGGAAGATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCCT
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