CX070004

Overview
NameCX070004
Unique NameCX070004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.911e-23
Identity = 57/103 (55.34%), Postives = 66/103 (64.08%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETP+AHVFKADLPGL             VLQISG+R  EKE+KND WHRVERSSG F RRFRLPEN K+D++KA+M +G                KAI ISG
Sbjct:   55 KETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.720e-23
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPEAHVFKADLPGL             VLQISG+R  E E+KND WHRVER+SG F RRFRLPEN KM+++KA+ME+G
Sbjct:   57 KETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENG 136          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.934e-22
Identity = 51/80 (63.75%), Postives = 60/80 (75.00%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPEAHV KADLPG+             VLQISG+R  E+E+K+DTWHRVERSSG F RRFRLPEN KMD++KA ME+G
Sbjct:   50 KETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENG 129          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.831e-22
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPEAHVFKAD+PGL             VLQISG+R  E+E+K D WHRVERSSG F RRFRLPEN K +QIKASME+G
Sbjct:   59 KETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENG 138          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.535e-22
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFKAD+PGL             +LQISG+R  E+E+K D WHRVERSSG F RRFRLP+N K +QIKASME+G                K+I ISG
Sbjct:   59 KETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 6.535e-22
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPE HVFKAD+PGL             +LQISG+R  E+E+K+D WHRVERSSG F RRFRLPEN K +QIKASME+G                K+I ISG
Sbjct:   57 KETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 8.535e-22
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPEAHVFKAD+PGL             VLQISG+R  E+E+K D WHRVERSSG F RRFRLPEN K +QIKASME+G
Sbjct:   52 KETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENG 131          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.483e-21
Identity = 53/103 (51.46%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFK DLPG+             VL +SG+R  EKEDKND WHRVERSSG F RRFRLPE+ K++++KA +E+G                KAI ISG
Sbjct:   49 KETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.236e-21
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETP+AHVFKADLPGL             VLQISG+R  EKE+KN+ WHRVE SSG F RRFRLPEN  +D++KA ME+G
Sbjct:   57 KETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENG 136          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.610e-20
Identity = 53/103 (51.46%), Postives = 64/103 (62.14%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETPEAHVFKADLPG+             VL +SG+R  EKEDKND WHRVERSSG F RRFRL E+ K++++KA +E+G                KAI ISG
Sbjct:   49 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of CX070004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HSP11_DAUCA5.911e-2355.3417.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS181_ARATH7.720e-2363.7518.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_HELAN2.934e-2263.7517.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS181_ORYSJ3.831e-2265.0018.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS17A_ORYSJ6.535e-2253.4017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ6.535e-2253.4017.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ8.535e-2265.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT2.483e-2151.4616.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP12_DAUCA4.236e-2161.2518.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS16B_WHEAT1.610e-2051.4616.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C01-E2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070004 ID=CX070004; Name=CX070004; organism=Citrus sinensis; type=EST; length=444bp
TACCGCGGCCCCCCCCAAAGCTCAAATGAACAGAATACCATTACACAAAC
ATTCATGCAAGCAAATTACAAAACCAAAACATCACAGCATCCTTATACAA
GTATGCATAAAGACATACAGACAGACACTGGTTTAACCAGAGATTGCGAT
AGCCTTAACATCAGGTTTGGTCACCTCCACTTTCGGAACAGTAACAGTGA
GCACACCACTCTCCATGGAAGCCTTAATCTGATCCATCTTCACATTCTCA
GGCAGCCTGAACCTCCTTGAGAACATGCCACTGCTACGCTCAACGCGATG
CCACGTGTCGTTCTTGTCTTCCTTCTCAATCTTCCTCTGACCGCTTATCT
GAAGCACCCTGTCATCTTCGACCTCGACCTTCACTTCCTCTTTCCTCAGC
CCCGGAAGATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCCT
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