CX070004

Overview
NameCX070004
Unique NameCX070004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 7.477e-18
Identity = 45/73 (61.64%), Postives = 51/73 (69.86%), Query Frame = -1
Query:  136 LQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 354
            LQISG+R +EKEDKNDTWHRVERSSG F R FRLP+N K+DQ+KASME+G                KAI ISG
Sbjct:    2 LQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIEISG 74          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.267e-17
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPE HV   D+PGL             VL++SG+RK E+E K D WHRVERS G F R+FRLP+NV +D +KA +E+G
Sbjct:   72 KETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENG 151          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.410e-16
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ETPE HV   D+PGL             VL++SG+RK E++ K D WHRVERS G F R+F+LP+NV +D +KA ME+G
Sbjct:   80 KETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENG 159          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.473e-15
Identity = 49/106 (46.23%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  136 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKE--DKNDT-WHRVERSSGMFSRRFRLPENVKMDQIKASMESGXXXXXXXXXXXXXXXXKAIAISG 444
            +ETP AHVF ADLPG+             VL ISG+R  E++   KND  WH VERSSG F RRFRLP   ++DQ+ ASM++G                KAI ISG
Sbjct:   45 KETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVLTVTVPKEETKKPQLKAIPISG 150          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.925e-15
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ET E H    D+PGL             VL++SG+RK E+E K D WHRVERS G F R+F+LP+NV M+ +KA +E+G
Sbjct:   76 KETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENG 155          
BLAST of CX070004 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.594e-12
Identity = 36/80 (45.00%), Postives = 47/80 (58.75%), Query Frame = -1
Query:  205 RETPEAHVFKADLPGLXXXXXXXXXXXXXVLQISGQRKIEKEDKNDTWHRVERSSGMFSRRFRLPENVKMDQIKASMESG 444
            +ET  AHVF AD+PG+             VL+ISGQR    E+K + WHRVERSS  F R  RLP N   D + A++++G
Sbjct:   75 KETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNG 154          
The following BLAST results are available for this feature:
BLAST of CX070004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
HSP12_SOYBN7.477e-1861.64Class I heat shock protein (Fragment) OS=Glycine m... [more]
HSP41_SOYBN8.267e-1751.2522.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP41_PEA1.410e-1650.0022.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HS166_ORYSJ3.473e-1546.2316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP22_ARATH5.925e-1547.5022.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ3.594e-1245.0018.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14C01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14C01-E2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX070004 ID=CX070004; Name=CX070004; organism=Citrus sinensis; type=EST; length=444bp
TACCGCGGCCCCCCCCAAAGCTCAAATGAACAGAATACCATTACACAAAC
ATTCATGCAAGCAAATTACAAAACCAAAACATCACAGCATCCTTATACAA
GTATGCATAAAGACATACAGACAGACACTGGTTTAACCAGAGATTGCGAT
AGCCTTAACATCAGGTTTGGTCACCTCCACTTTCGGAACAGTAACAGTGA
GCACACCACTCTCCATGGAAGCCTTAATCTGATCCATCTTCACATTCTCA
GGCAGCCTGAACCTCCTTGAGAACATGCCACTGCTACGCTCAACGCGATG
CCACGTGTCGTTCTTGTCTTCCTTCTCAATCTTCCTCTGACCGCTTATCT
GAAGCACCCTGTCATCTTCGACCTCGACCTTCACTTCCTCTTTCCTCAGC
CCCGGAAGATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCCT
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