CX069988

Overview
NameCX069988
Unique NameCX069988
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069988_ssr670 microsatellite CX069988_ssr670:670..681. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:377..1175. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER16_ARATH (Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 1.073e-39
Identity = 90/214 (42.06%), Postives = 127/214 (59.35%), Query Frame = 2
Query:    5 CPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 646
            C   VSCADIL +A    V L+GGP++ V LGRRD R +  A    +LP P   LD+L + F   GL+ + D++ALSGAHT G A C  F  R+Y+F+     DPTL+  +  QLR++CP   +  +  N D T+P+ FDN YF NL+   GL  SDQ LFS     + + V  F  ++  F + F++++ ++G +   TGN GEIR +C RVN
Sbjct:  113 CRNKVSCADILALATRDVVVLTGGPNYPVELGRRDGRLSTVASVQHSLPQPSFKLDQLNTMFARHGLS-QTDMIALSGAHTIGFAHCGKFSKRIYNFSPKRPIDPTLNIRYALQLRQMCPIRVDLRIAINMDPTSPNTFDNAYFKNLQKGMGLFTSDQVLFS--DERSRSTVNSFASSEATFRQAFISAITKLGRVGVKTGNAGEIRRDCSRVN 323          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER19_ARATH (Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.402e-39
Identity = 94/213 (44.13%), Postives = 126/213 (59.15%), Query Frame = 2
Query:    5 CPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCP-QGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQ-GEIRLNCR 637
            CP +VSC+DIL IAA   + L+GGP + V  GR D + +       N+P    T+D+L   F + GL  + +LV LSG+HT G A C+ F GRLYD+  T +PDP+LD   L++LR  CP  GG+ GV+   D TTP VFDN YF+ L    GLL SDQ LF  P   T  I  +  R++  F K F  +M +MG++    G + GEIR +CR
Sbjct:  134 CPSLVSCSDILAIAARDFIHLAGGPYYQVKKGRWDGKRSTAKNVPPNIPRSNSTVDQLIKLFASKGLTVE-ELVVLSGSHTIGFAHCKNFLGRLYDYKGTKRPDPSLDQRLLKELRMSCPFSGGSSGVVLPLDATTPFVFDNGYFTGLGTNMGLLGSDQALFLDP--RTKPIALEMARDKQKFLKAFGDAMDKMGSIGVKRGKRHGEIRTDCR 343          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER64_ARATH (Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.087e-39
Identity = 94/216 (43.52%), Postives = 129/216 (59.72%), Query Frame = 2
Query:    5 CPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGG---NGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRV 643
            CP +VSCADIL++AA  +VALSGGP+WAVP GR+D R  ++A+  + LP P   + +L+ +F   GL+   DLVALSG HT G A C  F+ RL+ FN   + DPTL+ +F  +L  +CP      N G  +N D T    FDN Y+  L   K L  SD+ L + P   T  +V  +  +   F + FV SMI+M +   ++GN  E+RLNCRRV
Sbjct:  111 CPGIVSCADILSLAARDAVALSGGPTWAVPKGRKDGR-ISKAIETRQLPAPTFNISQLRQNFGQRGLS-MHDLVALSGGHTLGFAHCSSFQNRLHKFNTQKEVDPTLNPSFAARLEGVCPAHNTVKNAG--SNMDGTVTS-FDNIYYKMLIQGKSLFSSDESLLAVP--STKKLVAKYANSNEEFERAFVKSMIKMSS---ISGNGNEVRLNCRRV 316          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.187e-38
Identity = 91/221 (41.18%), Postives = 126/221 (57.01%), Query Frame = 2
Query:    5 CPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGG-----VLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 652
            CP VVSCADIL +A   +V ++G PS+ V  GRRD  T N    +  LP P  ++DE  + F++ GL D LD+  L GAH+ G+  C +   RLY+F NTGKPDPT++ T + QLR LCP     G     V  N D  + + F + Y+S +     +L+ DQEL +    D+  I ++F      F K+F  +M RMG++  LTG  GEIR +CR  N N
Sbjct:  122 CPGVVSCADILNLATRDAVHMAGAPSYPVFTGRRDGGTLNADAVD--LPSPSISVDESLAYFKSKGL-DVLDMTTLLGAHSMGKTHCSYVVDRLYNFKNTGKPDPTMNTTLVSQLRYLCPPRTQKGQTDPLVYLNPDSGSSNRFTSSYYSRVLSHNAVLRVDQELLNND--DSKEITQEFASGFEDFRKSFALAMSRMGSINVLTGTAGEIRRDCRVTNAN 337          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER69_ARATH (Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.644e-38
Identity = 93/218 (42.66%), Postives = 123/218 (56.42%), Query Frame = 2
Query:    2 ACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVE---DFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 646
            ACPR VSCADILT+AA  +V L+GG  W VPLGR D R +  +  + NLPGP D++ + K  F    LN  LDLV L G HT G A C   RGR  +FN TG+PDP++D +F+  +   CPQ  NGG     D  + D FD  +   +   + +LQSD  L+  P  +T AI+E      R    F   F  SM++M  ++  TG+ GEIR  C  +N
Sbjct:  121 ACPRTVSCADILTLAARDAVVLTGGQRWEVPLGRLDGRISQAS--DVNLPGPSDSVAKQKQDFAAKTLNT-LDLVTLVGGHTIGTAGCGLVRGRFVNFNGTGQPDPSIDPSFVPLILAQCPQ--NGGTRVELDEGSVDKFDTSFLRKVTSSRVVLQSDLVLWKDP--ETRAIIERLLGLRRPSLRFGTEFGKSMVKMSLIEVKTGSDGEIRRVCSAIN 331          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER51_ARATH (Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.890e-38
Identity = 88/214 (41.12%), Postives = 124/214 (57.94%), Query Frame = 2
Query:    5 CPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 646
            C   VSCADILT+A    V L+GGP +AV LGRRD  +++ +     LP P   L++L + F   GL+   D++ALSGAHT G A C     RLY+FN T   DPT++  ++ +L+  CPQ  +  V  N D  TP  FDN Y+ NL+  KGL  SDQ LF+   + +   V+ +  N   F + F++SMI++G +   TG+ G IR +C   N
Sbjct:  119 CRNKVSCADILTMATRDVVNLAGGPQYAVELGRRDGLSSSASSVTGKLPKPTFDLNQLNALFAENGLSPN-DMIALSGAHTLGFAHCTKVFNRLYNFNKTNNVDPTINKDYVTELKASCPQNIDPRVAINMDPNTPRQFDNVYYKNLQQGKGLFTSDQVLFT--DSRSKPTVDLWANNGQLFNQAFISSMIKLGRVGVKTGSNGNIRRDCGAFN 329          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER5_VITVI (Peroxidase 5 OS=Vitis vinifera GN=GSVIVT00037159001 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.693e-38
Identity = 88/215 (40.93%), Postives = 121/215 (56.28%), Query Frame = 2
Query:    5 CPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGG-NGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 646
            C  VVSCADI+  AA  SV ++GG  + VP GRRD R +  + A+ NLP P  T+D+L   F N GL    ++V LSGAHT GR+ C  F  RLY+FN T   DPTLD  +   L+  CPQG  N  ++   + ++P + D  Y+ ++   +GL  SDQ L +     TA  V     N   +   F ++M++MG L  L G  G+IR NCR +N
Sbjct:  150 CKGVVSCADIVAFAARDSVEITGGLGYDVPAGRRDGRISLASEASTNLPPPTFTVDQLTQFFSNKGLTQD-EMVTLSGAHTIGRSHCSSFSNRLYNFNGTSGQDPTLDPQYAASLKTQCPQGSTNTNLVVPMNPSSPSITDVGYYVDVLRNRGLFTSDQTLLT--DTTTATQVRQNAGNPFLWKNKFASAMVKMGQLGVLIGEAGQIRANCRVIN 361          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER27_ARATH (Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.005e-37
Identity = 88/214 (41.12%), Postives = 116/214 (54.21%), Query Frame = 2
Query:    5 CPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 646
            CP +VSC+DIL + A  ++    GPSW V  GRRD R +N  +   NLP PFD + +L S FR+ GLN+K DLV LSG HT G   C     RLY+F   G  DP+LD+ +  +LRK C        L   D  +   FD  YF+ +  R+GL QSD  L        A +++    + + FF +F  SM++MG    LTG  GEIR  CR  N
Sbjct:  113 CPGIVSCSDILALVARDAMVALEGPSWEVETGRRDGRVSN--INEVNLPSPFDNITKLISDFRSKGLNEK-DLVILSGGHTIGMGHCPLLTNRLYNFTGKGDSDPSLDSEYAAKLRKKCKPTDTTTAL-EMDPGSFKTFDLSYFTLVAKRRGLFQSDAALLDN-SKTRAYVLQQIRTHGSMFFNDFGVSMVKMGRTGVLTGKAGEIRKTCRSAN 321          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER66_ARATH (Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.714e-37
Identity = 92/216 (42.59%), Postives = 125/216 (57.87%), Query Frame = 2
Query:    2 ACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDV-TTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 646
            ACPR VSCAD++ IAA   V LSGGP W+V  GR+D  T +RA   +NLP P   + +L  SF   GL+ K D+V LSG HT G + C  F  RL +F+     DP+++  F Q L+K CP+  N G  A   + +T  VFDN Y+  +   KG+  SDQ L     + T  IVE F ++Q AFF+ F  SM+++GN        G++R+N R VN
Sbjct:  113 ACPRTVSCADVIAIAARDVVTLSGGPYWSVLKGRKDG-TISRANETRNLPPPTFNVSQLIQSFAARGLSVK-DMVTLSGGHTIGFSHCSSFESRLQNFSKFHDIDPSMNYAFAQTLKKKCPRTSNRGKNAGTVLDSTSSVFDNVYYKQILSGKGVFGSDQALLG--DSRTKWIVETFAQDQKAFFREFAASMVKLGNFG--VKETGQVRVNTRFVN 322          
BLAST of CX069988 vs. ExPASy Swiss-Prot
Match: PER30_ARATH (Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.238e-37
Identity = 86/212 (40.57%), Postives = 118/212 (55.66%), Query Frame = 2
Query:    5 CPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLR-KLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFSTPGADTAAIVEDF-GRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNC 634
            CP+ VSCADI+ + A  +V  +GGPSW+VP GRRD R +N+  A  N+P P      L+  F+N GLN K DLV LSGAHT G + C     RLY+F+ T K DP+LD+ +   L+   C    +   +   D  +   FD  Y+  +  R+GL QSD  L  T  + T  ++ D    ++  FFK F  SM +MG +K  TG+ G IR  C
Sbjct:  116 CPKTVSCADIIALTARDAVVATGGPSWSVPTGRRDGRISNKTEATNNIPPPTSNFTTLQRLFKNQGLNLK-DLVLLSGAHTIGVSHCSSMNTRLYNFSTTVKQDPSLDSQYAANLKANKCKSLNDNSTILEMDPGSSRSFDLSYYRLVLKRRGLFQSDSAL--TTNSATLKVINDLVNGSEKKFFKAFAKSMEKMGRVKVKTGSAGVIRTRC 324          
The following BLAST results are available for this feature:
BLAST of CX069988 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PER16_ARATH1.073e-3942.06Peroxidase 16 OS=Arabidopsis thaliana GN=PER16 PE=... [more]
PER19_ARATH1.402e-3944.13Peroxidase 19 OS=Arabidopsis thaliana GN=PER19 PE=... [more]
PER64_ARATH9.087e-3943.52Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=... [more]
PER61_ARATH1.187e-3841.18Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER69_ARATH2.644e-3842.66Peroxidase 69 OS=Arabidopsis thaliana GN=PER69 PE=... [more]
PER51_ARATH5.890e-3841.12Peroxidase 51 OS=Arabidopsis thaliana GN=PER51 PE=... [more]
PER5_VITVI7.693e-3840.93Peroxidase 5 OS=Vitis vinifera GN=GSVIVT0003715900... [more]
PER27_ARATH1.005e-3741.12Peroxidase 27 OS=Arabidopsis thaliana GN=PER27 PE=... [more]
PER66_ARATH1.714e-3742.59Peroxidase 66 OS=Arabidopsis thaliana GN=PER66 PE=... [more]
PER30_ARATH2.238e-3740.57Peroxidase 30 OS=Arabidopsis thaliana GN=PER30 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14B03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14B03-C6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069988 ID=CX069988; Name=CX069988; organism=Citrus sinensis; type=EST; length=798bp
GGCATGTCCAAGGGTTGTTTCCTGCGCTGATATTCTTACTATTGCGGCTG
AACGATCCGTTGCTTTGTCAGGGGGTCCGTCATGGGCAGTTCCATTGGGA
AGAAGAGACAGCAGAACGGCAAACAGAGCTCTTGCAAATCAGAATCTTCC
AGGACCATTTGATACTCTTGATGAGCTCAAATCTAGTTTTAGAAATGTTG
GCCTCAATGACAAGCTTGATCTTGTTGCACTCTCCGGAGCACACACGTTC
GGAAGGGCTCAGTGCCAATTTTTCAGGGGCAGATTATACGATTTTAACAA
CACTGGCAAGCCAGACCCAACCCTAGACGCAACCTTCTTACAACAACTGA
GGAAACTATGCCCACAAGGTGGAAACGGCGGCGTTCTTGCTAATTTTGAT
GTCACGACACCTGATGTTTTCGACAACAAATACTTCTCCAATCTTAGAGG
CCGCAAAGGCCTTCTGCAGAGTGATCAAGAGTTGTTTTCGACTCCTGGTG
CCGATACCGCTGCCATTGTCGAGGACTTTGGGAGGAACCAGAATGCTTTC
TTTAAAAACTTTGTGACCTCAATGATAAGAATGGGAAATTTGAAACCACT
GACAGGAAATCAAGGGGAGATTAGATTGAACTGCAGGAGGGTCAATGGAA
ACAGTAATATTGCAACAAGATCATCATCATCAGAGGGTGATTTGGTCAGC
TCTTTCTAAATAAGCTAGCTTGCAGCATATGCGCGAGAGTTTTTGTGCTT
ACAAACTCAAATTTAATCTGATCGTTTTGCCTGAAACATGTTATGTAC
back to top