CX069978

Overview
NameCX069978
Unique NameCX069978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069978_ssr325 microsatellite CX069978_ssr325:325..339. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:33..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = -3
Query:  426 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 677
            M   D   + F+GGL   T + +L   FG YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = -3
Query:  426 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 677
            M   D   + F+GGL   T + +L   FG YG I+E  ++ DRET +SRGF FVTF      +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 39/96 (40.62%), Postives = 61/96 (63.54%), Query Frame = -3
Query:  423 VPILSFLLMASGDVEF---RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 701
            VP+ S L    G + +   + ++GGL+  T + SL +AF ++  + E++++ ++ TGRSRG+GFV F  E S   AI  MNGQ L+G NI+VN A+
Sbjct:   17 VPVSSML----GSLRYMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  423 SGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 671
            S D   R +VG LAW     +L   F   G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 265          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = -3
Query:  423 SGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 671
            S D   R +VG LAW     +L   F   G ++++K++ DR++GRSRGFGFVT+   + + +AIE ++G +L+GR I V+ A+
Sbjct:  189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAE 271          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RBM3_HUMAN (Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = -3
Query:  426 EFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 659
            E + FVGGL + T + +L + F ++G I E  ++ DRET RSRGFGF+TF + +    A+  MNG++LDGR I V+ A
Sbjct:    5 EGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHA 82          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = -3
Query:  426 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 677
            M   D   + F+GGL   T + +L   FG YG I+E  ++ DRET +SRGF FVTF      +D    MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: HNRPG_MOUSE (Heterogeneous nuclear ribonucleoprotein G OS=Mus musculus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = -3
Query:  426 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 677
            M   D   + F+GGL   T + +L   FG YG I+E  ++ DRET +SRGF FVT       +DA   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = -3
Query:  426 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 677
            M   D   + F+GGL   T + SL   FG YG I E  ++ DRET +SRGF F+TF      + A+  MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQA 84          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: HNRGT_MACFA (RNA-binding motif protein, X-linked-like-2 OS=Macaca fascicularis GN=RBMXL2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.724e-12
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = -3
Query:  426 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 677
            M   D   + F+GGL   T + +L   FG YG I+E  ++ DRET +SRGF FVTF    + + A   MNG++LDG+ I V +A
Sbjct:    1 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPANAKAAARDMNGKSLDGKAIKVAQA 84          
The following BLAST results are available for this feature:
BLAST of CX069978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
HNRPG_PANTR1.444e-1344.05Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN1.444e-1344.05Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
RT19_ARATH2.463e-1340.6340S ribosomal protein S19, mitochondrial OS=Arabid... [more]
ROC1_NICSY3.217e-1340.9629 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL3.217e-1340.9630 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM3_HUMAN3.217e-1346.15Putative RNA-binding protein 3 OS=Homo sapiens GN=... [more]
HNRPG_RAT4.202e-1342.86Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
HNRPG_MOUSE9.361e-1342.86Heterogeneous nuclear ribonucleoprotein G OS=Mus m... [more]
HNRPG_BOVIN1.223e-1242.86Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]
HNRGT_MACFA2.724e-1242.86RNA-binding motif protein, X-linked-like-2 OS=Maca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A09-A18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069978 ID=CX069978; Name=CX069978; organism=Citrus sinensis; type=EST; length=721bp
TTTTTTGAAAAGAACTGTAATTCATTTCATTTTTTTTTCAAACAATTAAC
CAAACAGGGAGATCGAAACAACACAGGATAACAGGAACCGATCAAAACGA
CACAACATAACCCAAGGAAAATATCAAAACACGAAACCATAACATAGCTC
CTAATTTATCCTAAACAACACTAATTCCTCCAGCTGCCGCCATCAGAAGC
ACCGCTCCTTGAGTATCGGGAACCACCATCACCGCCATATCCACCATCAC
GGCTGTAACCACCTTCACGGCGGCCACCATATCCTCCACCACCGCCACCT
CCGTATCCGCGGCTCCCACCGTATCCACCACCACCACCACTTTCACGGCG
TCCACCACCTCCATATCCGCCACCGCCGCGGCTTCCGTAACCACCACCGC
CACCGCCACCGCTTCCGCGGGACTGGGCCTCGTTGACTGTGATGTTACGG
CCGTCGAGATTCTGGCCGTTCATGCCTTCGATCGCGTCCCTCATCGACTT
CTCATCGCGGAAGGTAACGAATCCAAATCCTCTGGATCTTCCAGTCTCGC
GATCGTTAATTATCTTCGATTCAAGGATATCGCCGTAAGCACCGAAGGCC
TCATGGAGAGAGCTGTCAGTGGTGGCCCAGGCCAGGCCGCCTACGAAGCA
CCTAAACTCGACATCGCCTGAAGCCATTAGGAGAAAACTTAAAATGGGGA
CTAAGAAAAAATTACAAGAAA
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