CX069978

Overview
NameCX069978
Unique NameCX069978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069978_ssr325 microsatellite CX069978_ssr325:325..339. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1537 contig Csv1_Contig1537:33..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  426 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 653
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RBM38_MOUSE (RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  426 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 653
            + FVGGL + TTD+SL + F  +GDI E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   33 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAADRACKDPN-PIIDGRKANVNLA 107          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 36/76 (47.37%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  426 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 653
            + FVGGL + TTDSSL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPN-PIIDGRKANVNLA 86          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RBY1A_MOUSE (RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Mus musculus GN=Rbmy1a1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.136e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = -3
Query:  423 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQ 677
            MA  +   + F+GGL   T   +L E FG +G +    ++ DRET +SRGF F+TFR     ++A++ MNG  LDG+ I V +A+
Sbjct:    1 MAETNQPGKIFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEMNGVILDGKRIKVKQAR 85          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 31/76 (40.79%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  426 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 653
            + F+GGL W TTD SL + F  +G++L+  ++ D  TGRSRGFGF+TF++ K + + +      +LDG+ I    A
Sbjct:  164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMS--KEHHLDGKIIDPKRA 237          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RBM24_HUMAN (RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 35/76 (46.05%), Postives = 49/76 (64.47%), Query Frame = -3
Query:  426 RCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEA 653
            + FVGGL + TTD+SL + F  +G+I E+ +I DR+TG+SRG+GFVT  D  +   A +  N   +DGR   VN A
Sbjct:   12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RMXL3_PANTR (RNA-binding motif protein, X-linked-like-3 OS=Pan troglodytes GN=RBMXL3 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 35/81 (43.21%), Postives = 46/81 (56.79%), Query Frame = -3
Query:  435 MASGDVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITV 677
            M   D   + FVGGL   T + +L   FG YG I++  +I DR+T +SRGF FVTF      + A   MNG+ LDG+ I V
Sbjct:    1 MMEADRPEKLFVGGLNLKTDEKALKAEFGKYGHIIKVFLIKDRKTNKSRGFAFVTFESPADAKAAARDMNGKYLDGKAIMV 81          
BLAST of CX069978 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.761e-11
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = -3
Query:  441 DVEFRCFVGGLAWATTDSSLHEAFGAYGDILESKIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNG-QNLDGRNI 665
            D   + FVGGL+W TT  +L   F  +GDI++  ++ + E+GRSRGFGFVTF D  ++   ++  NG   LDGR I
Sbjct:    4 DERGKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ--NGPHTLDGRTI 77          
The following BLAST results are available for this feature:
BLAST of CX069978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RBM38_XENTR3.011e-1147.37RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
RBM38_MOUSE3.933e-1147.37RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE... [more]
RBM24_DANRE3.933e-1147.37RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
RBY1A_MOUSE5.136e-1140.00RNA-binding motif protein, Y chromosome, family 1 ... [more]
YHKF_SCHPO6.708e-1140.79Uncharacterized RNA-binding protein C660.15 OS=Sch... [more]
RBM24_HUMAN6.708e-1146.05RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE... [more]
RMXL3_PANTR8.761e-1143.21RNA-binding motif protein, X-linked-like-3 OS=Pan ... [more]
RB27C_DROME8.761e-1144.74Heterogeneous nuclear ribonucleoprotein 27C OS=Dro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A09-A18-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069978 ID=CX069978; Name=CX069978; organism=Citrus sinensis; type=EST; length=721bp
TTTTTTGAAAAGAACTGTAATTCATTTCATTTTTTTTTCAAACAATTAAC
CAAACAGGGAGATCGAAACAACACAGGATAACAGGAACCGATCAAAACGA
CACAACATAACCCAAGGAAAATATCAAAACACGAAACCATAACATAGCTC
CTAATTTATCCTAAACAACACTAATTCCTCCAGCTGCCGCCATCAGAAGC
ACCGCTCCTTGAGTATCGGGAACCACCATCACCGCCATATCCACCATCAC
GGCTGTAACCACCTTCACGGCGGCCACCATATCCTCCACCACCGCCACCT
CCGTATCCGCGGCTCCCACCGTATCCACCACCACCACCACTTTCACGGCG
TCCACCACCTCCATATCCGCCACCGCCGCGGCTTCCGTAACCACCACCGC
CACCGCCACCGCTTCCGCGGGACTGGGCCTCGTTGACTGTGATGTTACGG
CCGTCGAGATTCTGGCCGTTCATGCCTTCGATCGCGTCCCTCATCGACTT
CTCATCGCGGAAGGTAACGAATCCAAATCCTCTGGATCTTCCAGTCTCGC
GATCGTTAATTATCTTCGATTCAAGGATATCGCCGTAAGCACCGAAGGCC
TCATGGAGAGAGCTGTCAGTGGTGGCCCAGGCCAGGCCGCCTACGAAGCA
CCTAAACTCGACATCGCCTGAAGCCATTAGGAGAAAACTTAAAATGGGGA
CTAAGAAAAAATTACAAGAAA
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