CX069971

Overview
NameCX069971
Unique NameCX069971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE_BOVIN (Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 4.324e-39
Identity = 88/222 (39.64%), Postives = 132/222 (59.46%), Query Frame = -3
Query:  167 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFERALQSVA 823
            V++ A YL+S   +++ ++ L   +S     +N T  L+A  I+ ++++ + AL+  + G ++E  A+ VQI LK+ R D A ++L+ MQ  DED TLTQLA AW++LA GG K+Q+AY IFQ+ ++K   T L+LNG+A C M  G ++ AEG            PETL NLVV S H GK    T+RYL+QLK  H  H  +K   + +  F+R +   A
Sbjct:   84 VRMFAEYLASDSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQYA 305          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE_DICDI (Coatomer subunit epsilon OS=Dictyostelium discoideum GN=cope PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.394e-29
Identity = 76/217 (35.02%), Postives = 124/217 (57.14%), Query Frame = -3
Query:  188 VKLLALYLSSPD-NKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQI-DEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKST---SRYLNQLKLTHPDHMLVKRASSGDESFE 823
            ++LLA YLS PD N+E T+ ++ +W+SD  +  N  L++I   I+ +E+ Y+EAL+  N    +E  ++ +QIFLK+ R D A++    M++I D D T   L+ AW+N+  G  K++ A   F++ +E+Y  T L+LNG+AVC + M  F++AE            + +TLANL+ C ++  K      R++NQLK   P H      +  +  FE
Sbjct:   77 LQLLASYLSKPDENREGTLITITQWISDGVVKFNYHLQVIIATIYFNEQLYDEALQILNNCDHIEGLSMLIQIFLKIDRLDLAQKAYDTMKKIIDPDATPALLSLAWINIYNGEEKLKSALSSFEEMAERYGPTPLLLNGQAVCAIGMKRFEKAESLLLESIEKNPKNSDTLANLINCYINMKKPNEIIQRFINQLKTLSPKHDWTSAVNEAEALFE 293          
BLAST of CX069971 vs. ExPASy Swiss-Prot
Match: COPE_CAEEL (Coatomer subunit epsilon OS=Caenorhabditis elegans GN=F45G2.4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.022e-12
Identity = 59/217 (27.19%), Postives = 106/217 (48.85%), Query Frame = -3
Query:  185 VKLLALYLSSPDNKESTISSLKEWLSDPAIGSNATLRLIAGIIFMHEEDYNE-ALKHTNAGGTMELHALNVQIFLKMHRSDYAERQLRAMQQIDEDHTLTQLANAWLNLAVGGSKIQEAYLIFQDFSEKYPMTGLILNGKAVCCMHMGNFDEAEGXXXXXXXXXXXDPETLANLVVCSLHQGKS---TSRYLNQLKLTHPDHMLVKRASSGDESFER 823
            V+  A + ++P  K+  ++ ++E ++   I S     L A I+  +E D ++ A +  +    +E  A  V I +KM++   A  +++ M QIDED TL+QLANA +       K+++A  I+ + S+KY  T  +   +AV  +   ++  AE            D + L N +V +    K      R+++QLK  HP+H  V   +  +  F+R
Sbjct:   71 VRRYAEFRNNPAAKKKILAEVQEEVASRNIKSEIAAVLAATIL--NEADLSQDAFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGASGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQDYAAAEELLESALERDNKDADVLINSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVIDFNEKEAEFDR 285          
The following BLAST results are available for this feature:
BLAST of CX069971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COPE_BOVIN4.324e-3939.64Coatomer subunit epsilon OS=Bos taurus GN=COPE PE=... [more]
COPE_DICDI1.394e-2935.02Coatomer subunit epsilon OS=Dictyostelium discoide... [more]
COPE_CAEEL2.022e-1227.19Coatomer subunit epsilon OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_14A06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A06-A12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069971 ID=CX069971; Name=CX069971; organism=Citrus sinensis; type=EST; length=825bp
TTCTTGAAATATTTAACATATACATACGTATCTTTATCCAAGAATTCAAA
AAGGGTAAATACCCATCTCTATGCTAACAAACACAATCTTTCAAATCAAT
CATATACTTCTCTTGTAGGTTACAAAAATCATTCACCTCTTGGCCCCAAA
ATGACTCTAGTTTTCAGGCAACAGATTGAAGTGCTCTTTCAAAGCTCTCA
TCTCCGGATGAAGCACGCTTGACAAGCATGTGGTCTGGGTGTGTAAGCTT
CAACTGGTTGAGGTAACGTGAAGTTGATTTTCCTTGGTGAAGACTGCATA
CAACCAGGTTGGCAAGAGTTTCTGGATCTTTAGCATCCTTGTTGAGTGCA
TCAAGCAACAATCCTTCAGCTTCATCAAAGTTCCCCATATGCATGCAGCA
AACAGCCTTTCCATTCAAGATCAACCCTGTCATTGGATACTTCTCAGAGA
AATCTTGAAAGATGAGATATGCTTCCTGTATCTTGGAACCACCCACTGCC
AAATTCAACCAAGCATTTGCAAGTTGAGTTAGGGTGTGGTCCTCATCAAT
CTGTTGCATGGCCCTCAGCTGTCTCTCTGCATAGTCAGACCTGTGCATCT
TAAGGAATATTTGGACATTCAATGCATGTAATTCCATGGTCCCTCCAGCA
TTGGTGTGTTTGAGTGCCTCATTATAATCCTCTTCATGCATGAATATGAT
ACCAGCAATCAAGCGTAATGTCGCATTGCTCCCAATGGCTGGATCTGACA
ACCACTCTTTTAAACTTGAAATTGTTGATTCCTTGTTGTCAGGGCTAGAG
AGATAGAGAGCAAGCAACTTCACGG
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