CX069967

Overview
NameCX069967
Unique NameCX069967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069967 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 42/114 (36.84%), Postives = 73/114 (64.04%), Query Frame = 3
Query:  177 FKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 512
            FK       R  E  +IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX069967 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 42/114 (36.84%), Postives = 73/114 (64.04%), Query Frame = 3
Query:  177 FKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 512
            FK       R  E  +IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of CX069967 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.609e-16
Identity = 43/116 (37.07%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  174 SFKLEHPLERRQAESARIREKYPDRIPVIVEK--AERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 512
            SFK   P   RQ +   IR + P+++PVI+E+   ERS +P +D+ K+LVP  +TV + + +VR+R++L  ++A F+ V +  +   +  MS +Y + +D DGF+YM Y+ +  FG
Sbjct:   16 SFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERS-LPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of CX069967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3A_MOUSE1.171e-1636.84Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN1.171e-1636.84Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL2.609e-1637.07Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14A03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A03-A6-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069967 ID=CX069967; Name=CX069967; organism=Citrus sinensis; type=EST; length=757bp
TTTTCTTTCACCCCACTCTTTGAATAATTTTTTTTTTTCAATTTCTTTAA
TGGCGTACAAGAGAACAAAATAAAAAGGAAGTTTCTTGAAAAATAATAAT
CCACAACAATAATTTGTCTACTCTTGATCAGCAGAAGCAGTAGAAAGAAC
AAGGAGAAGCTATGGCCAAGAGCTCCTTCAAGCTTGAACACCCACTCGAA
AGGAGGCAGGCTGAATCTGCCCGTATCAGGGAGAAGTATCCTGATAGAAT
ACCAGTGATTGTGGAGAAGGCTGAAAGGAGTGACATACCTGATATTGACA
AAAAAAAATACCTGGTTCCTGCTGATCTGACTGTTGGACAATTTGTTTAT
GTGGTCCGGAAGAGGATAAAGCTCAGTGCTGAGAAGGCCATATTCATATT
TGTCAAGAACATTTTGCCACCCACTGCTGCAATGATGTCTGCAATTTATG
AGGAAAACAAAGATGAGGATGGCTTCCTTTACATGACTTACAGTGGGGAG
AACACATTCGGGGCATCTTTCTAAGGGAATCAACTGAACTTCTGTAGATT
AACTCTGAAAAGACTTGATGGAAATATGTAAATCCTTTGCTATTTGCTTT
CAACTGAGGGAGCACTTGGAAAGCATGATCTTCCTGGACGCAGCCCCTTC
TTAAAGTTTGGATCTATTGTTACTCCTCTTTATCTTATTTGTTGCAGTAA
ATATTCGTGATTTCATATTGGATGAGCAAGTTAATACAGGTACTGTTGGA
TTACTAA
back to top