CX069966

Overview
NameCX069966
Unique NameCX069966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_YEAS7 (Autophagy-related protein 8 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.840e-45
Identity = 86/115 (74.78%), Postives = 104/115 (90.43%), Query Frame = -2
Query:  248 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 592
            KS+FK E+P E+R+AES RI +++ +RIPVI EKAE+SDIP+IDK+KYLVPADLTVGQFVYV+RKRI L  EKAIFIFV + LPPTAA+MSAIY+E+KD+DGFLY+TYSGENTFG
Sbjct:    2 KSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.840e-45
Identity = 88/118 (74.58%), Postives = 100/118 (84.75%), Query Frame = -2
Query:  239 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGASF 592
            +S FK +   E+R+ ES RIREKYPDRIPVI EK ++SDI  IDKKKYLVP+DLTVGQFVYV+RKRIKLS EKAIFIF+  ILPPTAA+MS IYEE+K EDGFLY+TYSGENTFG  F
Sbjct:    2 RSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_CANGA (Autophagy-related protein 8 OS=Candida glabrata GN=ATG8 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.024e-44
Identity = 85/115 (73.91%), Postives = 103/115 (89.57%), Query Frame = -2
Query:  248 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 592
            KSSFK E+P E+R+AES RI EK+ +RIPVI EKAE+SDIP++DK+KYLVPADLTVGQFVYV+RKRI L  EKAIFIFV + LPPTA++MS +Y+E+KD+DGFLY+TYSGENTFG
Sbjct:    2 KSSFKSEYPFEKRKAESERISEKFQNRIPVICEKAEKSDIPEVDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTASLMSQVYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_PICST (Autophagy-related protein 8 OS=Pichia stipitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.337e-44
Identity = 84/115 (73.04%), Postives = 101/115 (87.83%), Query Frame = -2
Query:  248 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 592
            +S FK EHP E+RQAE+ RI +++ DR+PVI EK E SDIP+IDK+KYLVP DL+VGQFVYV+RKRIKL +EKAIFIFV +ILPPTAA++S IYEE+KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRQAEATRIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLSVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_PICAN (Autophagy-related protein 8 OS=Pichia angusta GN=ATG8 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.337e-44
Identity = 86/115 (74.78%), Postives = 102/115 (88.70%), Query Frame = -2
Query:  248 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 592
            +S FK EHP ERR+AE++RIR K+ DRIPVI EK E SDIP+IDK+KYLVP+DLTVGQFVYV+RKRI+L +EKAIFIFV +ILPPTA++MS IYE+ KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFERRKAEASRIRGKFLDRIPVICEKVEESDIPEIDKRKYLVPSDLTVGQFVYVIRKRIQLPSEKAIFIFVNDILPPTASLMSTIYEQYKDEDGFLYILYSGENTFG 116          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_DEBHA (Autophagy-related protein 8 OS=Debaryomyces hansenii GN=ATG8 PE=3 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 8.668e-44
Identity = 83/115 (72.17%), Postives = 101/115 (87.83%), Query Frame = -2
Query:  248 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 592
            +S FK EHP E+R+AE+ RI +++ DR+PVI EKAE SDI +IDK+KYLVP DL+VGQFVYV+RKRIKL +EKAIFIF+ +ILPPTAA+MS IYEE+KDEDGFLY+ YSGENTFG
Sbjct:    2 RSQFKDEHPFEKRKAEATRITQRFNDRLPVICEKAENSDIQEIDKRKYLVPGDLSVGQFVYVIRKRIKLPSEKAIFIFINDILPPTAALMSTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_ASHGO (Autophagy-related protein 8 OS=Ashbya gossypii GN=ATG8 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.252e-42
Identity = 80/115 (69.57%), Postives = 103/115 (89.57%), Query Frame = -2
Query:  245 SSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 589
            SSFK E+P E+R+AES RI  ++ +R+PVI E+AE+SDIP++D++KYLVPADLTVGQFVYV+R+RIKL AEKAIFIFV + LPPTAA+M A+Y+E+KD+DGFLY+ YSGENTFG+
Sbjct:    2 SSFKSEYPFEKRKAESERICSQFENRVPVICERAEKSDIPEVDRRKYLVPADLTVGQFVYVIRRRIKLPAEKAIFIFVNDTLPPTAALMFAVYQEHKDKDGFLYVKYSGENTFGS 116          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_KLULA (Autophagy-related protein 8 OS=Kluyveromyces lactis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.788e-42
Identity = 82/115 (71.30%), Postives = 101/115 (87.83%), Query Frame = -2
Query:  248 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 592
            KS+FK E P E+R+AES RI +K+ +RIPVI E+  +SDIPDIDK+KYLVP DLTVGQFVYV+RKRIKL AEKAIFIFV + LPPTAA+MS+IY+++KD+DGFLY++YS ENTFG
Sbjct:    2 KSAFKSEFPFEKRKAESERIVQKFHNRIPVICERGGKSDIPDIDKRKYLVPGDLTVGQFVYVIRKRIKLPAEKAIFIFVNDTLPPTAALMSSIYQQHKDKDGFLYVSYSSENTFG 116          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: ATG8_DICDI (Autophagy-related protein 8 OS=Dictyostelium discoideum GN=atg8 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 8.113e-42
Identity = 83/116 (71.55%), Postives = 100/116 (86.21%), Query Frame = -2
Query:  245 SSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRI-KLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGA 589
            SSFK +HPL++R+  + RIR KY DRIPVIVEKA RSD PDIDKKKYLVPAD+TVG+FVY +RK + K+SAEKAI++FV N +PPTAA++S IYE  KDEDGFLY+TYSGENTFG+
Sbjct:    5 SSFKNDHPLDKRREVAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVGKFVYEIRKHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFGS 120          
BLAST of CX069966 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.093e-36
Identity = 71/115 (61.74%), Postives = 90/115 (78.26%), Query Frame = -2
Query:  248 KSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 592
            K  FK +H LE R  ESA+IR KYPDR+PVIVEK   S I DIDK+KYLVP+D+TV QF++++RKRI+L +EKAIF+FV   +P ++  M  +YE+ KDEDGFLY+ YSGENTFG
Sbjct:    2 KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of CX069966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8_YEAS77.840e-4574.78Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_SCHPO7.840e-4574.58Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8_CANGA1.024e-4473.91Autophagy-related protein 8 OS=Candida glabrata GN... [more]
ATG8_PICST1.337e-4473.04Autophagy-related protein 8 OS=Pichia stipitis GN=... [more]
ATG8_PICAN1.337e-4474.78Autophagy-related protein 8 OS=Pichia angusta GN=A... [more]
ATG8_DEBHA8.668e-4472.17Autophagy-related protein 8 OS=Debaryomyces hansen... [more]
ATG8_ASHGO1.252e-4269.57Autophagy-related protein 8 OS=Ashbya gossypii GN=... [more]
ATG8_KLULA2.788e-4271.30Autophagy-related protein 8 OS=Kluyveromyces lacti... [more]
ATG8_DICDI8.113e-4271.55Autophagy-related protein 8 OS=Dictyostelium disco... [more]
GBRL2_RAT5.093e-3661.74Gamma-aminobutyric acid receptor-associated protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_14A03_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-14A03-A6-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069966 ID=CX069966; Name=CX069966; organism=Citrus sinensis; type=EST; length=758bp
TTTAGTTAATCCAACAGTACCTGTATTAACTTGCTCATCCAATATGAAAT
CACGAATATTTACTGCAACAAATAAGATAAAGAGGAGTAACAATAGATCC
AAACTTTAAGAAGGGGCTGCGTCCAGGAAGATCATGCTTTCCAAGTGCTC
CCTCAGTTGAAAGCAAATAGCAAAGGATTTACATATTTCCATCAAGTCTT
TTCAGAGTTAATCTACAGAAGTTCAGTTGATTCCCTTAGAAAGATGCCCC
GAATGTGTTCTCCCCACTGTAAGTCATGTAAAGGAAGCCATCCTCATCTT
TGTTTTCCTCATAAATTGCAGACATCATTGCAGCAGTGGGTGGCAAAATG
TTCTTGACAAATATGAATATGGCCTTCTCAGCACTGAGCTTTATCCTCTT
CCGGACCACATAAACAAATTGTCCAACAGTCAGATCAGCAGGAACCAGGT
ATTTTTTTTTGTCAATATCAGGTATGTCACTCCTTTCAGCCTTCTCCACA
ATCACTGGTATTCTATCAGGATACTTCTCCCTGATACGGGCAGATTCAGC
CTGCCTCCTTTCGAGTGGGTGTTCAAGCTTGAAGGAGCTCTTGGCCATAG
CTTCTCCTTGTTCTTTCTACTGCTTCTGCTGATCAAGAGTAGACAAATTA
TTGTTGTGGATTATTATTTTTCAAGAAACTTCCTTTTTATTTTGTTCTCT
TGTACGCCATTAAAGAAATTGAAAAAAAAAAATTATTCAAAGAGTGGGGT
GAAAGAAA
back to top