CX069961

Overview
NameCX069961
Unique NameCX069961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2700 contig Csv1_Contig2700:488..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX069961 vs. ExPASy Swiss-Prot
Match: PARP3_MEDTR (Putative poly [ADP-ribose] polymerase 3 OS=Medicago truncatula GN=PARP3 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.104e-11
Identity = 40/105 (38.10%), Postives = 55/105 (52.38%), Query Frame = -3 
Query:  224 PVGLMLLSEVGLG-EVYELKKAKYMDKPPDG-------KHSTKGLGKTVPQESDFVKWRDDVTVPCGKPAPSNVRASELMYNEYIVYNTAQVKMQFLLKVRFHHK 514
            P G ++L+   LG E+ ELK       PP+        K   KGLGK    ES+   W+DD+ VPCG    S    S L YNEY VY+  QV++ +L+ V++  K
Sbjct:  693 PEGFLVLAIASLGNEITELKS------PPEDTTSLEEKKVGVKGLGKKKTDESEHFVWKDDIKVPCGSIIASEHEDSPLEYNEYAVYDPKQVRISYLVGVKYEEK 791
The following BLAST results are available for this feature:
BLAST of CX069961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PARP3_MEDTR6.104e-1138.10Putative poly [ADP-ribose] polymerase 3 OS=Medicag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H11-O21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069961 ID=CX069961; Name=CX069961; organism=Citrus sinensis; type=EST; length=594bp
TTTTTTTAACACCAAAGTACCCTTTTTTTACACATTTACCAACATCATTT
ACATAGCCAAAAGCAGCAGTTGAAAGATCTCCAGGCAAACCCCAAAATGA
GATCTTACAATCTTATCCAAGAGTTAAAATTTCTCATGTGGTAATTAAAG
ACATTCAGATATTCAGACAATCAGTCATGACCTTTCCCAAAAGAGAGTGG
GCATCCAGTTACCTCCTTCATCTCTTGTGATGAAACCTCACCTTCAACAG
GAACTGCATCTTAACTTGAGCAGTATTATAAACAATGTATTCATTGTACA
TCAGCTCAGAAGCCCTGACATTTGAAGGTGCTGGTTTTCCACATGGCACA
GTGACATCATCTCTCCACTTCACAAAATCAGATTCCTGTGGTACAGTCTT
GCCAAGTCCTTTAGTGGAGTGCTTCCCATCAGGTGGTTTATCCATATACT
TCGCCTTCTTGAGCTCATAAACCTCTCCCAAGCCCACTTCACTCAGAAGC
ATTAAGCCCACTGGATTTTTTCTTATCCGTAAAGCAATACTGAGCACTTT
TACTGACTAGGTCAGCAAAGTAAATTCCCTTTACCAAACATATA
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