CX069957

Overview
NameCX069957
Unique NameCX069957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_AETGR (30S ribosomal protein S3, chloroplastic OS=Aethionema grandiflora GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_AETCO (30S ribosomal protein S3, chloroplastic OS=Aethionema cordifolium GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.422e-26
Identity = 56/60 (93.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PIPCE (30S ribosomal protein S3, chloroplastic OS=Piper cenocladum GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG+LGIKIWIF+DEK
Sbjct:  161 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGILGIKIWIFLDEK 220          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_BARVE (30S ribosomal protein S3, chloroplastic OS=Barbarea verna GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.387e-26
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIFVDE
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWIFVDE 217          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_POPTR (30S ribosomal protein S3, chloroplastic OS=Populus trichocarpa GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.095e-25
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGRLDGKEIARAEW+REGRVPLQT+ AKI+YCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRLDGKEIARAEWVREGRVPLQTLRAKINYCSYTVRTIYGVLGIKIWIFVDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_POPAL (30S ribosomal protein S3, chloroplastic OS=Populus alba GN=rps3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.095e-25
Identity = 55/60 (91.67%), Postives = 59/60 (98.33%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGRLDGKEIARAEW+REGRVPLQT+ AKI+YCSYTVRTIYGVLGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRLDGKEIARAEWVREGRVPLQTLRAKINYCSYTVRTIYGVLGIKIWIFVDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_TOBAC (30S ribosomal protein S3, chloroplastic OS=Nicotiana tabacum GN=rps3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:  159 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_NICSY (30S ribosomal protein S3, chloroplastic OS=Nicotiana sylvestris GN=rps3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIKIWIF+DE+
Sbjct:  159 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKIWIFLDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_GOSHI (30S ribosomal protein S3, chloroplastic OS=Gossypium hirsutum GN=rps3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGR+DGKEIAR EWIREGRVPLQTIGAKI+YCSY VRTIYGVLGIKIWIF+DE+
Sbjct:  159 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIGAKIEYCSYRVRTIYGVLGIKIWIFIDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_GOSBA (30S ribosomal protein S3, chloroplastic OS=Gossypium barbadense GN=rps3 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.868e-25
Identity = 53/60 (88.33%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGR+DGKEIAR EWIREGRVPLQTIGAKI+YCSY VRTIYGVLGIKIWIF+DE+
Sbjct:  159 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIGAKIEYCSYRVRTIYGVLGIKIWIFIDEE 218          
The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_AETGR6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_AETCO6.422e-2693.3330S ribosomal protein S3, chloroplastic OS=Aethion... [more]
RR3_PIPCE8.387e-2690.0030S ribosomal protein S3, chloroplastic OS=Piper c... [more]
RR3_BARVE8.387e-2694.9230S ribosomal protein S3, chloroplastic OS=Barbare... [more]
RR3_POPTR1.095e-2591.6730S ribosomal protein S3, chloroplastic OS=Populus... [more]
RR3_POPAL1.095e-2591.6730S ribosomal protein S3, chloroplastic OS=Populus... [more]
RR3_TOBAC1.868e-2590.0030S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_NICSY1.868e-2590.0030S ribosomal protein S3, chloroplastic OS=Nicotia... [more]
RR3_GOSHI1.868e-2588.3330S ribosomal protein S3, chloroplastic OS=Gossypi... [more]
RR3_GOSBA1.868e-2588.3330S ribosomal protein S3, chloroplastic OS=Gossypi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bp
AGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGC
GCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCT
AAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGG
AATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTC
TTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTT
TTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTT
GAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAG
TGTGCGACTCGTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCG
TCCTGTAGTATGAACTAATAACTATAGCACTAATAACCAACTCATTGCTT
CGTATTATCTGAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATA
TCGTTGTAGCAACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTA
GGTTGTGAAGTTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAA
TGGAAGGATGAGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCC
AATATGTAAGGTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCAT
CAATAATGATTCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAA
TCAAGAGCCCCGAGCCAATA
back to top