CX069957
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24 Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC Y VRTIYG+LGIKIWIFVDE+ Sbjct: 159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CERDE (30S ribosomal protein S3, chloroplastic OS=Ceratophyllum demersum GN=rps3 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24 Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178 GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSY VRTIYGVLGIKIWIFVDE Sbjct: 159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYMVRTIYGVLGIKIWIFVDE 217
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_LOTJA (30S ribosomal protein S3, chloroplastic OS=Lotus japonicus GN=rps3 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.698e-24 Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 G+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIK+WIF++++ Sbjct: 159 GVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKVWIFLNKE 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_SPIOL (30S ribosomal protein S3, chloroplastic OS=Spinacia oleracea GN=rps3 PE=1 SV=3) HSP 1 Score: 112.079 bits (279), Expect = 3.524e-24 Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC+YTVRTIYGVLGIKIWIF+ E+ Sbjct: 159 GIQIQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDYCAYTVRTIYGVLGIKIWIFMGEE 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_RANMC (30S ribosomal protein S3, chloroplastic OS=Ranunculus macranthus GN=rps3 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24 Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF E+ Sbjct: 158 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 217
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_IPOPU (30S ribosomal protein S3, chloroplastic OS=Ipomoea purpurea GN=rps3 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24 Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178 GIQVQIAGR+DGKEIAR EWIREGRVP QTI AKIDYCSY VRTIYGVLGIKIWIF+DE Sbjct: 159 GIQVQIAGRIDGKEIARVEWIREGRVPRQTIRAKIDYCSYPVRTIYGVLGIKIWIFLDE 217
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PHAAO (30S ribosomal protein S3, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps3 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23 Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CS+TVRTIYG+LGIKIWIFV+++ Sbjct: 159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSHTVRTIYGILGIKIWIFVNQE 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ILLOL (30S ribosomal protein S3, chloroplastic OS=Illicium oligandrum GN=rps3 PE=3 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23 Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQVQI+GR++GKEIAR EWIREGRVPLQTI AKID+CSY VRTIYGVLGIKIWIF+DE+ Sbjct: 159 GIQVQISGRINGKEIARVEWIREGRVPLQTIRAKIDHCSYAVRTIYGVLGIKIWIFLDEE 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_AMBTC (30S ribosomal protein S3, chloroplastic OS=Amborella trichopoda GN=rps3 PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23 Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GI+VQIAGRL+GKEIAR EWIREGRVPL TI AKIDYCSY V+TIYGVLGIKIWIFVDE+ Sbjct: 159 GIRVQIAGRLNGKEIARVEWIREGRVPLHTIRAKIDYCSYMVQTIYGVLGIKIWIFVDEE 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_SOYBN (30S ribosomal protein S3, chloroplastic OS=Glycine max GN=rps3 PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23 Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169 G+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC YTVRTIYGVLGIK+WIF Sbjct: 159 GVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIYGVLGIKVWIF 214 The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bpback to top |