CX069957

Overview
NameCX069957
Unique NameCX069957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:664..1433. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CUCSA (30S ribosomal protein S3, chloroplastic OS=Cucumis sativus GN=rps3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 53/60 (88.33%), Postives = 56/60 (93.33%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC Y VRTIYG+LGIKIWIFVDE+
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYPVRTIYGILGIKIWIFVDEQ 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CERDE (30S ribosomal protein S3, chloroplastic OS=Ceratophyllum demersum GN=rps3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.582e-24
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CSY VRTIYGVLGIKIWIFVDE
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSYMVRTIYGVLGIKIWIFVDE 217          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_LOTJA (30S ribosomal protein S3, chloroplastic OS=Lotus japonicus GN=rps3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.698e-24
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            G+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYGVLGIK+WIF++++
Sbjct:  159 GVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGVLGIKVWIFLNKE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_SPIOL (30S ribosomal protein S3, chloroplastic OS=Spinacia oleracea GN=rps3 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.524e-24
Identity = 52/60 (86.67%), Postives = 57/60 (95.00%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC+YTVRTIYGVLGIKIWIF+ E+
Sbjct:  159 GIQIQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDYCAYTVRTIYGVLGIKIWIFMGEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_RANMC (30S ribosomal protein S3, chloroplastic OS=Ranunculus macranthus GN=rps3 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 52/60 (86.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKIDYCSYTVRTIYG LGIKIWIF  E+
Sbjct:  158 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCSYTVRTIYGALGIKIWIFAGEE 217          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_IPOPU (30S ribosomal protein S3, chloroplastic OS=Ipomoea purpurea GN=rps3 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.602e-24
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GIQVQIAGR+DGKEIAR EWIREGRVP QTI AKIDYCSY VRTIYGVLGIKIWIF+DE
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPRQTIRAKIDYCSYPVRTIYGVLGIKIWIFLDE 217          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PHAAO (30S ribosomal protein S3, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps3 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.025e-23
Identity = 51/60 (85.00%), Postives = 58/60 (96.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGR+DGKEIAR EWIREGRVPLQTI AKID+CS+TVRTIYG+LGIKIWIFV+++
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCSHTVRTIYGILGIKIWIFVNQE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ILLOL (30S ribosomal protein S3, chloroplastic OS=Illicium oligandrum GN=rps3 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.749e-23
Identity = 51/60 (85.00%), Postives = 57/60 (95.00%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQI+GR++GKEIAR EWIREGRVPLQTI AKID+CSY VRTIYGVLGIKIWIF+DE+
Sbjct:  159 GIQVQISGRINGKEIARVEWIREGRVPLQTIRAKIDHCSYAVRTIYGVLGIKIWIFLDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_AMBTC (30S ribosomal protein S3, chloroplastic OS=Amborella trichopoda GN=rps3 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.284e-23
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GI+VQIAGRL+GKEIAR EWIREGRVPL TI AKIDYCSY V+TIYGVLGIKIWIFVDE+
Sbjct:  159 GIRVQIAGRLNGKEIARVEWIREGRVPLHTIRAKIDYCSYMVQTIYGVLGIKIWIFVDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_SOYBN (30S ribosomal protein S3, chloroplastic OS=Glycine max GN=rps3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.983e-23
Identity = 50/56 (89.29%), Postives = 53/56 (94.64%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            G+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKIDYC YTVRTIYGVLGIK+WIF
Sbjct:  159 GVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDYCCYTVRTIYGVLGIKVWIF 214          
The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_CUCSA1.582e-2488.3330S ribosomal protein S3, chloroplastic OS=Cucumis... [more]
RR3_CERDE1.582e-2491.5330S ribosomal protein S3, chloroplastic OS=Ceratop... [more]
RR3_LOTJA2.698e-2485.0030S ribosomal protein S3, chloroplastic OS=Lotus j... [more]
RR3_SPIOL3.524e-2486.6730S ribosomal protein S3, chloroplastic OS=Spinaci... [more]
RR3_RANMC4.602e-2486.6730S ribosomal protein S3, chloroplastic OS=Ranuncu... [more]
RR3_IPOPU4.602e-2489.8330S ribosomal protein S3, chloroplastic OS=Ipomoea... [more]
RR3_PHAAO1.025e-2385.0030S ribosomal protein S3, chloroplastic OS=Phalaen... [more]
RR3_ILLOL1.749e-2385.0030S ribosomal protein S3, chloroplastic OS=Illiciu... [more]
RR3_AMBTC2.284e-2386.6730S ribosomal protein S3, chloroplastic OS=Amborel... [more]
RR3_SOYBN2.983e-2389.2930S ribosomal protein S3, chloroplastic OS=Glycine... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bp
AGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGC
GCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCT
AAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGG
AATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTC
TTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTT
TTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTT
GAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAG
TGTGCGACTCGTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCG
TCCTGTAGTATGAACTAATAACTATAGCACTAATAACCAACTCATTGCTT
CGTATTATCTGAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATA
TCGTTGTAGCAACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTA
GGTTGTGAAGTTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAA
TGGAAGGATGAGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCC
AATATGTAAGGTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCAT
CAATAATGATTCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAA
TCAAGAGCCCCGAGCCAATA
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