CX069957

Overview
NameCX069957
Unique NameCX069957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_METPP (30S ribosomal protein S3 OS=Methylibium petroleiphilum (strain PM1) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 31/56 (55.36%), Postives = 42/56 (75.00%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            GI++  AGRL+G EIAR EW REGRVPL T+ A IDY     +T YG++G+K+W++
Sbjct:  148 GIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYGFSEAKTTYGIIGVKVWVY 203          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_DICT6 (30S ribosomal protein S3 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 33/56 (58.93%), Postives = 43/56 (76.79%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            GI+V  +GRL+G EIAR+EW REGR+PLQT+ A IDY      TI GV+G+K+WI+
Sbjct:  149 GIKVMCSGRLNGAEIARSEWFREGRIPLQTLTADIDYGFAEAFTISGVIGVKVWIY 204          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_CAMC5 (30S ribosomal protein S3 OS=Campylobacter curvus (strain 525.92) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI++ +AGRL G E+AR EW  EGRVPL T+ AKIDY      T YG +GIK+WIF  E
Sbjct:  148 GIKISVAGRLGGAEMARTEWYLEGRVPLHTLRAKIDYGVAEAHTTYGNIGIKVWIFKGE 206          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_CAMC1 (30S ribosomal protein S3 OS=Campylobacter concisus (strain 13826) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI++ +AGRL G E+AR EW  EGRVPL T+ AKIDY      T YG +GIK+WIF  E
Sbjct:  148 GIKISVAGRLGGAEMARTEWYLEGRVPLHTLRAKIDYGVAEAHTTYGNIGIKVWIFKGE 206          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_BORGA (30S ribosomal protein S3 OS=Borrelia garinii GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 37/90 (41.11%), Postives = 56/90 (62.22%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK*EFTGL*SPPINGNKPNKERALFIFNQNK 271
            G++++IAGRL G EIAR+  ++EGRVPL T+ A IDY     +T YG++G+K+W+F  E     T   +  +   KP +ER   + N +K
Sbjct:  151 GLKIKIAGRLGGAEIARSFEVKEGRVPLHTLRANIDYGFSEAQTTYGIIGVKVWLFKGEVLGRQTNSDAGQVINKKPFRERGESVKNFDK 240          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_AZOC5 (30S ribosomal protein S3 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI++  +GRL G EIAR EW REGRVPL T+ A +DY + T  T YG  G+K+WIF  E
Sbjct:  148 GIRINCSGRLGGAEIARLEWYREGRVPLHTLRADVDYGTATAFTTYGTCGVKVWIFKGE 206          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_AKKM8 (30S ribosomal protein S3 OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.389e-12
Identity = 31/55 (56.36%), Postives = 42/55 (76.36%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 166
            GI+++ AGRL G +IARAEW REG+VPLQT+   IDY     RT+YG++G+K W+
Sbjct:  150 GIRIRCAGRLGGADIARAEWYREGKVPLQTLRTPIDYGFAEARTLYGIIGVKCWV 204          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_XANP2 (30S ribosomal protein S3 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI++  +GRL G EIAR EW REGRVPL T+ A +DY + T  T YG  G+K+W+F  E
Sbjct:  148 GIRINCSGRLGGAEIARLEWYREGRVPLHTLRADVDYGTATAFTTYGTCGVKVWVFKGE 206          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_SULDN (30S ribosomal protein S3 OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI+V ++GRL G E+AR EW  EGRVPL T+ AKIDY      T YG +G+K+WIF  E
Sbjct:  148 GIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRAKIDYGFAEAHTTYGCIGVKVWIFKGE 206          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_RHOFD (30S ribosomal protein S3 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            GI++  +GRL+G EIAR EW REGRVPL T+ A IDY +   +T YG++G+K+W++
Sbjct:  148 GIKIMSSGRLNGIEIARCEWYREGRVPLHTLRADIDYGTSEAQTTYGIIGVKVWVY 203          
The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS3_METPP1.389e-1255.3630S ribosomal protein S3 OS=Methylibium petroleiph... [more]
RS3_DICT61.389e-1258.9330S ribosomal protein S3 OS=Dictyoglomus thermophi... [more]
RS3_CAMC51.389e-1257.6330S ribosomal protein S3 OS=Campylobacter curvus (... [more]
RS3_CAMC11.389e-1257.6330S ribosomal protein S3 OS=Campylobacter concisus... [more]
RS3_BORGA1.389e-1241.1130S ribosomal protein S3 OS=Borrelia garinii GN=rp... [more]
RS3_AZOC51.389e-1255.9330S ribosomal protein S3 OS=Azorhizobium caulinoda... [more]
RS3_AKKM81.389e-1256.3630S ribosomal protein S3 OS=Akkermansia muciniphil... [more]
RS3_XANP21.814e-1254.2430S ribosomal protein S3 OS=Xanthobacter autotroph... [more]
RS3_SULDN1.814e-1255.9330S ribosomal protein S3 OS=Sulfurimonas denitrifi... [more]
RS3_RHOFD1.814e-1253.5730S ribosomal protein S3 OS=Rhodoferax ferrireduce... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bp
AGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGC
GCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCT
AAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGG
AATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTC
TTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTT
TTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTT
GAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAG
TGTGCGACTCGTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCG
TCCTGTAGTATGAACTAATAACTATAGCACTAATAACCAACTCATTGCTT
CGTATTATCTGAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATA
TCGTTGTAGCAACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTA
GGTTGTGAAGTTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAA
TGGAAGGATGAGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCC
AATATGTAAGGTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCAT
CAATAATGATTCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAA
TCAAGAGCCCCGAGCCAATA
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