CX069957

Overview
NameCX069957
Unique NameCX069957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:664..1433. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_BORAP (30S ribosomal protein S3 OS=Borrelia afzelii (strain PKo) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK*EFTGL*SPPINGNKPNKERALFIFNQNK 271
            G++++IAGRL G EIAR+  ++EGRVPL T+ A IDY      T YG++G+K+W+F  E     T   +  +   KP +ER   + N +K
Sbjct:  151 GLKIKIAGRLGGAEIARSFEVKEGRVPLHTLRANIDYGFSEAHTTYGIIGVKVWLFKGEVLGRQTNSDAGQVINKKPFRERGETVKNFDK 240          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_BART1 (30S ribosomal protein S3 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI++  +GRL G EIAR EW REGRVPL T+ + +DY +   +T YG+ GIK+W+F  E
Sbjct:  148 GIRINCSGRLGGAEIARMEWYREGRVPLHTLRSDVDYGTAEAKTAYGICGIKVWVFKGE 206          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_ACICJ (30S ribosomal protein S3 OS=Acidiphilium cryptum (strain JF-5) GN=rpsC PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI++  +GRL G EIAR EW REGRVPL T+ A ID+   T +T YG  G+K+WIF  E
Sbjct:  147 GIRINCSGRLGGAEIARMEWYREGRVPLHTLRADIDFGVATAKTTYGTCGVKVWIFKGE 205          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_WOLSU (30S ribosomal protein S3 OS=Wolinella succinogenes GN=rpsC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI+++++GRL G E+AR EW  EGRVPL T+ AKIDY      T YG++G K+WIF  E
Sbjct:  148 GIKIKVSGRLAGAEMARTEWYMEGRVPLHTLRAKIDYGFAEAMTTYGIIGAKVWIFKGE 206          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_RALEH (30S ribosomal protein S3 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            GI++  AGRL+G EIAR EW REGRVPL T+ A IDY      T YG++G+K+W++
Sbjct:  148 GIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYGFSEAETTYGIIGVKVWVY 203          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_MYCSS (30S ribosomal protein S3 OS=Mycobacterium sp. (strain MCS) GN=rpsC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 244
            GI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  Y  +T +G +G+K+WI+  +    K E T   + P   ++P +ER
Sbjct:  148 GIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_MYCSK (30S ribosomal protein S3 OS=Mycobacterium sp. (strain KMS) GN=rpsC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 244
            GI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  Y  +T +G +G+K+WI+  +    K E T   + P   ++P +ER
Sbjct:  148 GIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_MYCSJ (30S ribosomal protein S3 OS=Mycobacterium sp. (strain JLS) GN=rpsC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 244
            GI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY  Y  +T +G +G+K+WI+  +    K E T   + P   ++P +ER
Sbjct:  148 GIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_CUPTR (30S ribosomal protein S3 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            GI++  AGRL+G EIAR EW REGRVPL T+ A IDY      T YG++G+K+W++
Sbjct:  148 GIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYGFSEAETTYGIIGVKVWVY 203          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_CHLPD (30S ribosomal protein S3 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsC PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178
            GI+++ AGRL G EIARAE  +EG++PL TI A +DY S T  TI G +GIK+W++  E
Sbjct:  150 GIRIRCAGRLGGAEIARAEQYKEGKIPLHTIRANVDYASVTAHTIAGTIGIKVWVYKGE 208          
The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS3_BORAP1.814e-1241.1130S ribosomal protein S3 OS=Borrelia afzelii (stra... [more]
RS3_BART11.814e-1252.5430S ribosomal protein S3 OS=Bartonella tribocorum ... [more]
RS3_ACICJ1.814e-1255.9330S ribosomal protein S3 OS=Acidiphilium cryptum (... [more]
RS3_WOLSU2.369e-1254.2430S ribosomal protein S3 OS=Wolinella succinogenes... [more]
RS3_RALEH2.369e-1255.3630S ribosomal protein S3 OS=Ralstonia eutropha (st... [more]
RS3_MYCSS2.369e-1244.0530S ribosomal protein S3 OS=Mycobacterium sp. (str... [more]
RS3_MYCSK2.369e-1244.0530S ribosomal protein S3 OS=Mycobacterium sp. (str... [more]
RS3_MYCSJ2.369e-1244.0530S ribosomal protein S3 OS=Mycobacterium sp. (str... [more]
RS3_CUPTR2.369e-1255.3630S ribosomal protein S3 OS=Cupriavidus taiwanensi... [more]
RS3_CHLPD2.369e-1254.2430S ribosomal protein S3 OS=Chlorobium phaeobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bp
AGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGC
GCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCT
AAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGG
AATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTC
TTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTT
TTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTT
GAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAG
TGTGCGACTCGTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCG
TCCTGTAGTATGAACTAATAACTATAGCACTAATAACCAACTCATTGCTT
CGTATTATCTGAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATA
TCGTTGTAGCAACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTA
GGTTGTGAAGTTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAA
TGGAAGGATGAGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCC
AATATGTAAGGTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCAT
CAATAATGATTCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAA
TCAAGAGCCCCGAGCCAATA
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