CX069957
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_BORAP (30S ribosomal protein S3 OS=Borrelia afzelii (strain PKo) GN=rpsC PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12 Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK*EFTGL*SPPINGNKPNKERALFIFNQNK 271 G++++IAGRL G EIAR+ ++EGRVPL T+ A IDY T YG++G+K+W+F E T + + KP +ER + N +K Sbjct: 151 GLKIKIAGRLGGAEIARSFEVKEGRVPLHTLRANIDYGFSEAHTTYGIIGVKVWLFKGEVLGRQTNSDAGQVINKKPFRERGETVKNFDK 240
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_BART1 (30S ribosomal protein S3 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpsC PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178 GI++ +GRL G EIAR EW REGRVPL T+ + +DY + +T YG+ GIK+W+F E Sbjct: 148 GIRINCSGRLGGAEIARMEWYREGRVPLHTLRSDVDYGTAEAKTAYGICGIKVWVFKGE 206
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_ACICJ (30S ribosomal protein S3 OS=Acidiphilium cryptum (strain JF-5) GN=rpsC PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.814e-12 Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178 GI++ +GRL G EIAR EW REGRVPL T+ A ID+ T +T YG G+K+WIF E Sbjct: 147 GIRINCSGRLGGAEIARMEWYREGRVPLHTLRADIDFGVATAKTTYGTCGVKVWIFKGE 205
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_WOLSU (30S ribosomal protein S3 OS=Wolinella succinogenes GN=rpsC PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12 Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178 GI+++++GRL G E+AR EW EGRVPL T+ AKIDY T YG++G K+WIF E Sbjct: 148 GIKIKVSGRLAGAEMARTEWYMEGRVPLHTLRAKIDYGFAEAMTTYGIIGAKVWIFKGE 206
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_RALEH (30S ribosomal protein S3 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsC PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12 Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169 GI++ AGRL+G EIAR EW REGRVPL T+ A IDY T YG++G+K+W++ Sbjct: 148 GIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYGFSEAETTYGIIGVKVWVY 203
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_MYCSS (30S ribosomal protein S3 OS=Mycobacterium sp. (strain MCS) GN=rpsC PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12 Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 244 GI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY Y +T +G +G+K+WI+ + K E T + P ++P +ER Sbjct: 148 GIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_MYCSK (30S ribosomal protein S3 OS=Mycobacterium sp. (strain KMS) GN=rpsC PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12 Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 244 GI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY Y +T +G +G+K+WI+ + K E T + P ++P +ER Sbjct: 148 GIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_MYCSJ (30S ribosomal protein S3 OS=Mycobacterium sp. (strain JLS) GN=rpsC PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12 Identity = 37/84 (44.05%), Postives = 55/84 (65.48%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE---KK*EFTGL*SPPINGNKPNKER 244 GI+VQ +GRL G E++R+E+ REGRVPL T+ A IDY Y +T +G +G+K+WI+ + K E T + P ++P +ER Sbjct: 148 GIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRADIDYGLYEAKTTFGRIGVKVWIYKGDIVGGKRELTA--AAPAGADRPRRER 229
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_CUPTR (30S ribosomal protein S3 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsC PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12 Identity = 31/56 (55.36%), Postives = 41/56 (73.21%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169 GI++ AGRL+G EIAR EW REGRVPL T+ A IDY T YG++G+K+W++ Sbjct: 148 GIKIMSAGRLNGIEIARTEWYREGRVPLHTLRADIDYGFSEAETTYGIIGVKVWVY 203
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RS3_CHLPD (30S ribosomal protein S3 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rpsC PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.369e-12 Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDE 178 GI+++ AGRL G EIARAE +EG++PL TI A +DY S T TI G +GIK+W++ E Sbjct: 150 GIRIRCAGRLGGAEIARAEQYKEGKIPLHTIRANVDYASVTAHTIAGTIGIKVWVYKGE 208 The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bpback to top |