CX069957
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CUSEX (Plastid 30S ribosomal protein S3 OS=Cuscuta exaltata GN=rps3 PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.896e-23 Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 184 GIQVQIAGR+DGKEIAR EWIREGRVP QTI A +DYCSY VRTIYGVLG+KIWIF+D+ K Sbjct: 159 GIQVQIAGRVDGKEIARVEWIREGRVPRQTIRANLDYCSYPVRTIYGVLGVKIWIFLDQAK 219
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_EUCGG (30S ribosomal protein S3, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps3 PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23 Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169 GIQVQIAGRLDGKEIAR EW+REGRVPLQTI AKIDYCSY VRT+YGVLGIKIWIF Sbjct: 159 GIQVQIAGRLDGKEIARVEWMREGRVPLQTIRAKIDYCSYGVRTVYGVLGIKIWIF 214
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_NYMAL (30S ribosomal protein S3, chloroplastic OS=Nymphaea alba GN=rps3 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23 Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQVQIAGRL+G EIAR EWIREGRVPLQTI KID+CSY VRTIYGVLGIKIWIF+DE+ Sbjct: 159 GIQVQIAGRLNGNEIARVEWIREGRVPLQTIRVKIDHCSYPVRTIYGVLGIKIWIFLDEE 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_NUPAD (30S ribosomal protein S3, chloroplastic OS=Nuphar advena GN=rps3 PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23 Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQVQIAGRL+G EIAR EWIREGRVPLQTI KID+CSY VRTIYGVLGIKIWIF+DE+ Sbjct: 159 GIQVQIAGRLNGNEIARVEWIREGRVPLQTIRVKIDHCSYPVRTIYGVLGIKIWIFLDEE 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PHAAN (30S ribosomal protein S3, chloroplastic OS=Phaseolus angularis GN=rps3 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23 Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169 G+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKI+YC YTVRTIYGVLGIK+WIF Sbjct: 159 GVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGVLGIKVWIF 214
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ACOCL (30S ribosomal protein S3, chloroplastic OS=Acorus calamus GN=rps3 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23 Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKID+C + V+TIYGVLGIKIWIFVDE+ Sbjct: 159 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCFHKVQTIYGVLGIKIWIFVDEE 218
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PHAVU (30S ribosomal protein S3, chloroplastic OS=Phaseolus vulgaris GN=rps3 PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22 Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169 G+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKI+YC YTVRTIYG+LGIK+WIF Sbjct: 159 GVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGILGIKVWIF 214
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_JASNU (30S ribosomal protein S3, chloroplastic OS=Jasminum nudiflorum GN=rps3 PE=3 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22 Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GI+VQ+AGR++GK+IAR EWIR GR+PLQTI KIDYC YT+RTIYGVLGIKIWIF+DEK Sbjct: 162 GIRVQMAGRINGKDIARVEWIRRGRLPLQTIRTKIDYCCYTIRTIYGVLGIKIWIFIDEK 221
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_EPIVI (Plastid 30S ribosomal protein S3 OS=Epifagus virginiana GN=rps3 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22 Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181 GIQVQI+GR+DGKEIAR EWIREGRVPLQTI AKI+YCSY VRT +GVLGIKIWIF++++ Sbjct: 161 GIQVQISGRIDGKEIARVEWIREGRVPLQTIQAKINYCSYMVRTTHGVLGIKIWIFIEKE 220
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CUSRE (Plastid 30S ribosomal protein S3 OS=Cuscuta reflexa GN=rps3 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 9.596e-22 Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 2 Query: 2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 175 GIQVQIAGR+DGKEIAR EWIREGRVP QTI A +DY SY VRTIYGVLGIKIWIF+D Sbjct: 159 GIQVQIAGRIDGKEIARVEWIREGRVPRQTIRANLDYSSYPVRTIYGVLGIKIWIFID 216 The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bpback to top |