CX069957

Overview
NameCX069957
Unique NameCX069957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:664..1433. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CUSEX (Plastid 30S ribosomal protein S3 OS=Cuscuta exaltata GN=rps3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.896e-23
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEKK 184
            GIQVQIAGR+DGKEIAR EWIREGRVP QTI A +DYCSY VRTIYGVLG+KIWIF+D+ K
Sbjct:  159 GIQVQIAGRVDGKEIARVEWIREGRVPRQTIRANLDYCSYPVRTIYGVLGVKIWIFLDQAK 219          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_EUCGG (30S ribosomal protein S3, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps3 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.088e-23
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            GIQVQIAGRLDGKEIAR EW+REGRVPLQTI AKIDYCSY VRT+YGVLGIKIWIF
Sbjct:  159 GIQVQIAGRLDGKEIARVEWMREGRVPLQTIRAKIDYCSYGVRTVYGVLGIKIWIF 214          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_NYMAL (30S ribosomal protein S3, chloroplastic OS=Nymphaea alba GN=rps3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGRL+G EIAR EWIREGRVPLQTI  KID+CSY VRTIYGVLGIKIWIF+DE+
Sbjct:  159 GIQVQIAGRLNGNEIARVEWIREGRVPLQTIRVKIDHCSYPVRTIYGVLGIKIWIFLDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_NUPAD (30S ribosomal protein S3, chloroplastic OS=Nuphar advena GN=rps3 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.645e-23
Identity = 51/60 (85.00%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQIAGRL+G EIAR EWIREGRVPLQTI  KID+CSY VRTIYGVLGIKIWIF+DE+
Sbjct:  159 GIQVQIAGRLNGNEIARVEWIREGRVPLQTIRVKIDHCSYPVRTIYGVLGIKIWIFLDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PHAAN (30S ribosomal protein S3, chloroplastic OS=Phaseolus angularis GN=rps3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23
Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            G+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKI+YC YTVRTIYGVLGIK+WIF
Sbjct:  159 GVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGVLGIKVWIF 214          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ACOCL (30S ribosomal protein S3, chloroplastic OS=Acorus calamus GN=rps3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.679e-23
Identity = 50/60 (83.33%), Postives = 56/60 (93.33%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGR+DGKEIAR EWIREGRVPLQTI AKID+C + V+TIYGVLGIKIWIFVDE+
Sbjct:  159 GIQIQIAGRIDGKEIARVEWIREGRVPLQTIRAKIDHCFHKVQTIYGVLGIKIWIFVDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PHAVU (30S ribosomal protein S3, chloroplastic OS=Phaseolus vulgaris GN=rps3 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.134e-22
Identity = 48/56 (85.71%), Postives = 53/56 (94.64%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIF 169
            G+QVQIAGR+DGKEIAR EWIREGRVPLQTI AKI+YC YTVRTIYG+LGIK+WIF
Sbjct:  159 GVQVQIAGRIDGKEIARVEWIREGRVPLQTIRAKIEYCCYTVRTIYGILGIKVWIF 214          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_JASNU (30S ribosomal protein S3, chloroplastic OS=Jasminum nudiflorum GN=rps3 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.933e-22
Identity = 47/60 (78.33%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GI+VQ+AGR++GK+IAR EWIR GR+PLQTI  KIDYC YT+RTIYGVLGIKIWIF+DEK
Sbjct:  162 GIRVQMAGRINGKDIARVEWIRRGRLPLQTIRTKIDYCCYTIRTIYGVLGIKIWIFIDEK 221          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_EPIVI (Plastid 30S ribosomal protein S3 OS=Epifagus virginiana GN=rps3 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.307e-22
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQVQI+GR+DGKEIAR EWIREGRVPLQTI AKI+YCSY VRT +GVLGIKIWIF++++
Sbjct:  161 GIQVQISGRIDGKEIARVEWIREGRVPLQTIQAKINYCSYMVRTTHGVLGIKIWIFIEKE 220          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_CUSRE (Plastid 30S ribosomal protein S3 OS=Cuscuta reflexa GN=rps3 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.596e-22
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVD 175
            GIQVQIAGR+DGKEIAR EWIREGRVP QTI A +DY SY VRTIYGVLGIKIWIF+D
Sbjct:  159 GIQVQIAGRIDGKEIARVEWIREGRVPRQTIRANLDYSSYPVRTIYGVLGIKIWIFID 216          
The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_CUSEX3.896e-2381.97Plastid 30S ribosomal protein S3 OS=Cuscuta exalta... [more]
RR3_EUCGG5.088e-2391.0730S ribosomal protein S3, chloroplastic OS=Eucalyp... [more]
RR3_NYMAL6.645e-2385.0030S ribosomal protein S3, chloroplastic OS=Nymphae... [more]
RR3_NUPAD6.645e-2385.0030S ribosomal protein S3, chloroplastic OS=Nuphar ... [more]
RR3_PHAAN8.679e-2387.5030S ribosomal protein S3, chloroplastic OS=Phaseol... [more]
RR3_ACOCL8.679e-2383.3330S ribosomal protein S3, chloroplastic OS=Acorus ... [more]
RR3_PHAVU1.134e-2285.7130S ribosomal protein S3, chloroplastic OS=Phaseol... [more]
RR3_JASNU1.933e-2278.3330S ribosomal protein S3, chloroplastic OS=Jasminu... [more]
RR3_EPIVI4.307e-2280.00Plastid 30S ribosomal protein S3 OS=Epifagus virgi... [more]
RR3_CUSRE9.596e-2284.48Plastid 30S ribosomal protein S3 OS=Cuscuta reflex... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bp
AGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGC
GCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCT
AAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGG
AATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTC
TTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTT
TTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTT
GAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAG
TGTGCGACTCGTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCG
TCCTGTAGTATGAACTAATAACTATAGCACTAATAACCAACTCATTGCTT
CGTATTATCTGAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATA
TCGTTGTAGCAACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTA
GGTTGTGAAGTTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAA
TGGAAGGATGAGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCC
AATATGTAAGGTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCAT
CAATAATGATTCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAA
TCAAGAGCCCCGAGCCAATA
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