CX069957

Overview
NameCX069957
Unique NameCX069957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4021 contig Csv1_Contig4021:664..1433. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ORYSJ (30S ribosomal protein S3, chloroplastic OS=Oryza sativa subsp. japonica GN=rps3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            G++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:  180 GVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ORYSI (30S ribosomal protein S3, chloroplastic OS=Oryza sativa subsp. indica GN=rps3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            G++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:  180 GVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ORYSA (30S ribosomal protein S3, chloroplastic OS=Oryza sativa GN=rps3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            G++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:  180 GVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_ORYNI (30S ribosomal protein S3, chloroplastic OS=Oryza nivara GN=rps3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            G++V+IAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:  180 GVKVKIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_MAIZE (30S ribosomal protein S3, chloroplastic OS=Zea mays GN=rps3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.810e-20
Identity = 46/60 (76.67%), Postives = 55/60 (91.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GI++QIAGRL GKEIARAE I++GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFV+E+
Sbjct:  165 GIKIQIAGRLAGKEIARAECIKKGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVEEE 224          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_HORVU (30S ribosomal protein S3, chloroplastic OS=Hordeum vulgare GN=rps3 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            G++V+IAGRL GKEIARAE I+ GR+PLQTI AKIDYC Y +RTIYGVLG+KIWIFVDE+
Sbjct:  180 GVKVKIAGRLGGKEIARAESIKRGRLPLQTIRAKIDYCCYPIRTIYGVLGVKIWIFVDEE 239          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_GINBI (30S ribosomal protein S3, chloroplastic OS=Ginkgo biloba GN=rps3 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.032e-20
Identity = 46/60 (76.67%), Postives = 51/60 (85.00%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GIQ+QIAGRLDG EIAR EW R GRVPLQTI A+ID+C Y  +TIYGVLGIKIWIF DE+
Sbjct:  159 GIQIQIAGRLDGNEIARVEWARGGRVPLQTIRARIDHCYYPAKTIYGVLGIKIWIFGDEE 218          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_HUPLU (30S ribosomal protein S3, chloroplastic OS=Huperzia lucidula GN=rps3 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.877e-20
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GI++QIAGRL+G EIAR EW REGRVPLQT+ A+IDYC Y  +TIYGVLGIKIWIF DE+
Sbjct:  160 GIKIQIAGRLNGTEIARVEWAREGRVPLQTLRAQIDYCYYPAQTIYGVLGIKIWIFRDEE 219          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_PINTH (30S ribosomal protein S3, chloroplastic OS=Pinus thunbergii GN=rps3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.981e-20
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWI 166
            GIQ+QIAGRLDGKEIAR EW R GRVPLQTI A+IDYC Y V+TIYGVLGIKIWI
Sbjct:  160 GIQIQIAGRLDGKEIARVEWDRGGRVPLQTIRARIDYCYYPVKTIYGVLGIKIWI 214          
BLAST of CX069957 vs. ExPASy Swiss-Prot
Match: RR3_MARPO (30S ribosomal protein S3, chloroplastic OS=Marchantia polymorpha GN=rps3 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.981e-20
Identity = 44/60 (73.33%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    2 GIQVQIAGRLDGKEIARAEWIREGRVPLQTIGAKIDYCSYTVRTIYGVLGIKIWIFVDEK 181
            GI++QIAGRL+G EIAR EW REGRVPLQTI A+I+YC Y  +TIYGVLGIK+WIF DE+
Sbjct:  158 GIKIQIAGRLNGAEIARVEWAREGRVPLQTIRARINYCYYAAQTIYGVLGIKVWIFQDEE 217          
The following BLAST results are available for this feature:
BLAST of CX069957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR3_ORYSJ1.810e-2076.6730S ribosomal protein S3, chloroplastic OS=Oryza s... [more]
RR3_ORYSI1.810e-2076.6730S ribosomal protein S3, chloroplastic OS=Oryza s... [more]
RR3_ORYSA1.810e-2076.6730S ribosomal protein S3, chloroplastic OS=Oryza s... [more]
RR3_ORYNI1.810e-2076.6730S ribosomal protein S3, chloroplastic OS=Oryza n... [more]
RR3_MAIZE1.810e-2076.6730S ribosomal protein S3, chloroplastic OS=Zea may... [more]
RR3_HORVU2.364e-2076.6730S ribosomal protein S3, chloroplastic OS=Hordeum... [more]
RR3_GINBI4.032e-2076.6730S ribosomal protein S3, chloroplastic OS=Ginkgo ... [more]
RR3_HUPLU6.877e-2075.0030S ribosomal protein S3, chloroplastic OS=Huperzi... [more]
RR3_PINTH8.981e-2083.6430S ribosomal protein S3, chloroplastic OS=Pinus t... [more]
RR3_MARPO8.981e-2073.3330S ribosomal protein S3, chloroplastic OS=Marchan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069957 ID=CX069957; Name=CX069957; organism=Citrus sinensis; type=EST; length=770bp
AGGAATTCAAGTACAAATTGCAGGGCGTCTTGACGGAAAAGAAATTGCGC
GCGCCGAATGGATCAGAGAAGGTAGAGTTCCTCTACAAACCATTGGAGCT
AAAATTGATTATTGTTCCTATACGGTTCGAACTATCTACGGGGTATTGGG
AATCAAAATTTGGATATTTGTAGACGAAAAAAAATAAGAGTTTACGGGTC
TTTAGAGCCCCCCCATTAATGGAAATAAACCAAACAAAGAACGAGCTCTT
TTTATCTTCAATCAAAACAAAAATGAGAAATTCCGCAATTCTATAGGGTT
GAATAAAAATTCGATTGATTTTTTTTTTTTTATATAATTGCTATGCTTAG
TGTGCGACTCGTTGGTTTTTTTTAGGGCTAGGATTCCAAAAAATGGACCG
TCCTGTAGTATGAACTAATAACTATAGCACTAATAACCAACTCATTGCTT
CGTATTATCTGAATCCAAAGAACCAGTCAAGATATAATATAGTGGTCATA
TCGTTGTAGCAACTGAAATTTGCATAACATAAAAACCCAATCTGATTGTA
GGTTGTGAAGTTCGAAGTTGTGAAAGAAAATCGAAAAGCATGCGGATAAA
TGGAAGGATGAGAGAAAGAGAGAAAGAAAATATCAATGATATAAGATTCC
AATATGTAAGGTCTGTAAGTCATCTCATAAAAAACAGTGTAATATAGCAT
CAATAATGATTCATCCCTAACTAGATGAATCCGCTCATAGAACAAAAAAA
TCAAGAGCCCCGAGCCAATA
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