CX069956
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CRUWA (30S ribosomal protein S8, chloroplastic OS=Crucihimalaya wallichii GN=rps8 PE=3 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 4.033e-55 Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK +N + FL+LTLRHRRN+K Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW Sbjct: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_BARVE (30S ribosomal protein S8, chloroplastic OS=Barbarea verna GN=rps8 PE=3 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 4.033e-55 Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK +N + FL+LTLRHRRN+K Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW Sbjct: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ARATH (30S ribosomal protein S8, chloroplastic OS=Arabidopsis thaliana GN=rps8 PE=3 SV=1) HSP 1 Score: 214.927 bits (546), Expect = 4.033e-55 Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK +N + FL+LTLRHRRN+K Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW Sbjct: 1 MGKDTIADIITSIRNADMNRKGTVRIGSTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_POPTR (30S ribosomal protein S8, chloroplastic OS=Populus trichocarpa GN=rps8 PE=3 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 5.267e-55 Identity = 110/136 (80.88%), Postives = 118/136 (86.76%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG+DT+ADIITSIRNADM+RKGTVRI STNITEN++KILLREGFIEN RK + F LTLRHRRNRKGP R LNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW Sbjct: 1 MGRDTLADIITSIRNADMDRKGTVRIPSTNITENIIKILLREGFIENVRK--HQEGNFFFFALTLRHRRNRKGPCRTSLNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_POPAL (30S ribosomal protein S8, chloroplastic OS=Populus alba GN=rps8 PE=3 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 5.267e-55 Identity = 110/136 (80.88%), Postives = 118/136 (86.76%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG+DT+ADIITSIRNADM+RKGTVRI STNITEN++KILLREGFIEN RK + F LTLRHRRNRKGP R LNLKRISRPGLRIY NY++IPRIL GMGIVILSTSRGIMTDR ARLERIGGEILCYIW Sbjct: 1 MGRDTLADIITSIRNADMDRKGTVRIPSTNITENIIKILLREGFIENVRK--HQEGNFFFFALTLRHRRNRKGPCRTSLNLKRISRPGLRIYSNYQQIPRILGGMGIVILSTSRGIMTDREARLERIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_LACSA (30S ribosomal protein S8, chloroplastic OS=Lactuca sativa GN=rps8 PE=3 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 5.267e-55 Identity = 110/136 (80.88%), Postives = 119/136 (87.50%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DTIADIITSIRNADM RK VR+ASTNI++++VKILLREGFIEN RK +N K FLVLTLRHRRNRK YR +LNLKRISRPGLRIY NY+RIPRIL GMGIVILSTS+GIMTDR ARLERIGGEILCYIW Sbjct: 1 MGSDTIADIITSIRNADMYRKSVVRVASTNISQSIVKILLREGFIENVRK--HRENNKSFLVLTLRHRRNRKRTYRNLLNLKRISRPGLRIYSNYQRIPRILGGMGIVILSTSQGIMTDREARLERIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ARAHI (30S ribosomal protein S8, chloroplastic OS=Arabis hirsuta GN=rps8 PE=3 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 5.267e-55 Identity = 110/136 (80.88%), Postives = 121/136 (88.97%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MGKDTIADIITSIRNADMNRKGTVRI STNITE++VKILLREGFIEN RK +N + FL+LTLRHRRN+K Y+ ILNLKRISRPGLRIY N +RIPRIL G+GIVILSTS+GIMTDR ARL+RIGGEILCYIW Sbjct: 1 MGKDTIADIITSIRNADMNRKGTVRIESTNITESIVKILLREGFIENVRK--HRENNQYFLILTLRHRRNKKESYKTILNLKRISRPGLRIYSNSQRIPRILGGIGIVILSTSQGIMTDREARLKRIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_NANDO (30S ribosomal protein S8, chloroplastic OS=Nandina domestica GN=rps8 PE=3 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 6.879e-55 Identity = 113/136 (83.09%), Postives = 120/136 (88.24%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG+DTIADIITSIRNADM++KGTVRIASTNITE +VKILLREGFIEN RK +N + FLV TLRHRRNRKGPYR IL KRISRPGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLE IGGEILCYIW Sbjct: 1 MGRDTIADIITSIRNADMDKKGTVRIASTNITETIVKILLREGFIENVRK--HRENDQFFLVSTLRHRRNRKGPYRTIL--KRISRPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLEGIGGEILCYIW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_COFAR (30S ribosomal protein S8, chloroplastic OS=Coffea arabica GN=rps8 PE=3 SV=1) HSP 1 Score: 214.157 bits (544), Expect = 6.879e-55 Identity = 110/136 (80.88%), Postives = 119/136 (87.50%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG+DT+A+IITSIRNADM++K VRI STNITEN+VKILLREGFIENARK +N K FLVLTLRHRRNRKGP+R I NLKRISRPGLRIY N +RIPRIL GMGIVI STSRGIMTDR ARLE IGGEILCYIW Sbjct: 1 MGRDTVAEIITSIRNADMDKKRVVRITSTNITENIVKILLREGFIENARK--HRENNKYFLVLTLRHRRNRKGPHRNIFNLKRISRPGLRIYANSQRIPRILGGMGIVIFSTSRGIMTDREARLEGIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_SOYBN (30S ribosomal protein S8, chloroplastic OS=Glycine max GN=rps8 PE=3 SV=1) HSP 1 Score: 213.772 bits (543), Expect = 8.985e-55 Identity = 109/136 (80.15%), Postives = 118/136 (86.76%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MGKDTIADIIT IRNADMN+KG V+I TNITEN+VKILLREGF+EN RK +N K FLVLTLR+RRNRKG Y+ LNLKRIS PGLRIY NY+RIPRIL GMGIVILSTSRGIMTDR ARLERIGGE+LCYIW Sbjct: 1 MGKDTIADIITYIRNADMNKKGMVQIPFTNITENIVKILLREGFVENVRK--HRENDKYFLVLTLRYRRNRKGSYKSFLNLKRISTPGLRIYSNYQRIPRILGGMGIVILSTSRGIMTDREARLERIGGEVLCYIW 134 The following BLAST results are available for this feature:
BLAST of CX069956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069956 ID=CX069956; Name=CX069956; organism=Citrus sinensis; type=EST; length=793bpback to top |