CX069956

Overview
NameCX069956
Unique NameCX069956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:767..1559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PHAAN (30S ribosomal protein S8, chloroplastic OS=Phaseolus angularis GN=rps8 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.027e-51
Identity = 102/136 (75.00%), Postives = 116/136 (85.29%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIA+IIT IRNADMN+KG V++  TNITE +VKILLREGF+EN RK    +N K FLVLTLR+RRNRK   +  LNLKRIS PGLRIY+NY++IPRIL GMGIVILSTSRGIMTDR ARLE+IGGE+LCYIW
Sbjct:    1 MGKDTIANIITYIRNADMNKKGMVQLPFTNITEKIVKILLREGFVENIRK--HRENNKYFLVLTLRYRRNRKESSKNFLNLKRISTPGLRIYYNYQQIPRILGGMGIVILSTSRGIMTDREARLEKIGGEVLCYIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PELHO (30S ribosomal protein S8, chloroplastic OS=Pelargonium hortorum GN=rps8 PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.343e-50
Identity = 99/136 (72.79%), Postives = 117/136 (86.03%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDT+++I+TSIRNADM +K TVRI  TNI +N+V ILLREGFI+NAR+    ++KK FLVLTLRHRRNRKGP R + NLKR+SRPGLRIY NY++IPRIL GMG+ ILSTS+GIMTDR ARL+RIGGEIL YIW
Sbjct:    1 MGKDTLSEIVTSIRNADMAKKETVRITFTNIAQNIVTILLREGFIKNARE--HRESKKSFLVLTLRHRRNRKGPSRTLFNLKRVSRPGLRIYSNYQKIPRILGGMGVAILSTSKGIMTDREARLKRIGGEILLYIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_SACHY (30S ribosomal protein S8, chloroplastic OS=Saccharum hybrid GN=rps8 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.991e-50
Identity = 102/138 (73.91%), Postives = 116/138 (84.06%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIAD++TSIRNADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK    ++ + FLVLTLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:    1 MGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRK--HQESNRYFLVLTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CUSRE (30S ribosomal protein S8, plastid OS=Cuscuta reflexa GN=rps8 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.991e-50
Identity = 101/136 (74.26%), Postives = 115/136 (84.56%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIAST+ITEN+VK+LLREGF EN RK    +N K F VLTLRHRRN+K P R IL LKRISRPGLRIY+  ++IPRIL GMG++I+STSRGIMTDR ARLE IGGEIL YIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTHITENIVKLLLREGFFENVRK--HRENNKNFFVLTLRHRRNKKRPLRNILKLKRISRPGLRIYYKSQKIPRILGGMGVIIISTSRGIMTDREARLEGIGGEILFYIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ACOCL (30S ribosomal protein S8, chloroplastic OS=Acorus calamus GN=rps8 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.991e-50
Identity = 106/135 (78.52%), Postives = 117/135 (86.67%), Query Frame = -2
Query:   73 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 477
            MGKDTIADIITSIRNA M +KGTVRIASTN+TENVVKILLREGFIEN RK    ++ K+FLVLTLRHRR RKG YR I  LKRISRPGLRIY NY+ IP+IL G+GIVI+STSRGIMTDR ARL+ IGGE+LCYI
Sbjct:    1 MGKDTIADIITSIRNAQMAKKGTVRIASTNLTENVVKILLREGFIENVRK--HRESNKDFLVLTLRHRRTRKGIYRTI--LKRISRPGLRIYSNYQGIPKILGGIGIVIVSTSRGIMTDREARLQGIGGEMLCYI 131          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CUSEX (30S ribosomal protein S8, plastid OS=Cuscuta exaltata GN=rps8 PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.102e-50
Identity = 102/136 (75.00%), Postives = 114/136 (83.82%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+IITSIRNADM+RK  VRIAST+ITEN+VK+LLREGF EN RK    +N K F VLTLRHRRN+K P R IL LKRISRPGLRIY+  +RIPRIL G G+VI+STSRGIMTDR ARLE IGGEIL YIW
Sbjct:    1 MGRDTIAEIITSIRNADMDRKRVVRIASTHITENIVKLLLREGFFENVRK--HRENNKNFFVLTLRHRRNKKRPLRNILKLKRISRPGLRIYYKSQRIPRILGGRGVVIISTSRGIMTDREARLEGIGGEILFYIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_SORBI (30S ribosomal protein S8, chloroplastic OS=Sorghum bicolor GN=rps8 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.484e-49
Identity = 101/138 (73.19%), Postives = 115/138 (83.33%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIAD++TSIRNADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK    ++ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:    1 MGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRK--HQESNRYFLVSTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_SACOF (30S ribosomal protein S8, chloroplastic OS=Saccharum officinarum GN=rps8 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.484e-49
Identity = 101/138 (73.19%), Postives = 115/138 (83.33%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIAD++TSIRNADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK    ++ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:    1 MGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRK--HQESNRYFLVSTLRHQRRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ORYSJ (30S ribosomal protein S8, chloroplastic OS=Oryza sativa subsp. japonica GN=rps8 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.484e-49
Identity = 101/138 (73.19%), Postives = 115/138 (83.33%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIAD++TSIRNADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK    ++ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:    1 MGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRK--HQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ORYSI (30S ribosomal protein S8, chloroplastic OS=Oryza sativa subsp. indica GN=rps8 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.484e-49
Identity = 101/138 (73.19%), Postives = 115/138 (83.33%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRH--RRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MGKDTIAD++TSIRNADMN+KGTVR+ STNITEN+VKILLREGFIE+ RK    ++ + FLV TLRH  R+ RKG YR    LKRISRPGLRIY NY+ IP++L GMGI ILSTSRGIMTDR ARL RIGGE+LCYIW
Sbjct:    1 MGKDTIADLLTSIRNADMNKKGTVRVVSTNITENIVKILLREGFIESVRK--HQESNRYFLVSTLRHQKRKTRKGIYRTRTFLKRISRPGLRIYANYQGIPKVLGGMGIAILSTSRGIMTDREARLNRIGGEVLCYIW 136          
The following BLAST results are available for this feature:
BLAST of CX069956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_PHAAN6.027e-5175.0030S ribosomal protein S8, chloroplastic OS=Phaseol... [more]
RR8_PELHO1.343e-5072.7930S ribosomal protein S8, chloroplastic OS=Pelargo... [more]
RR8_SACHY2.991e-5073.9130S ribosomal protein S8, chloroplastic OS=Sacchar... [more]
RR8_CUSRE2.991e-5074.2630S ribosomal protein S8, plastid OS=Cuscuta refle... [more]
RR8_ACOCL2.991e-5078.5230S ribosomal protein S8, chloroplastic OS=Acorus ... [more]
RR8_CUSEX5.102e-5075.0030S ribosomal protein S8, plastid OS=Cuscuta exalt... [more]
RR8_SORBI1.484e-4973.1930S ribosomal protein S8, chloroplastic OS=Sorghum... [more]
RR8_SACOF1.484e-4973.1930S ribosomal protein S8, chloroplastic OS=Sacchar... [more]
RR8_ORYSJ1.484e-4973.1930S ribosomal protein S8, chloroplastic OS=Oryza s... [more]
RR8_ORYSI1.484e-4973.1930S ribosomal protein S8, chloroplastic OS=Oryza s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069956 ID=CX069956; Name=CX069956; organism=Citrus sinensis; type=EST; length=793bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCT
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