CX069956
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_EPIVI (30S ribosomal protein S8, plastid OS=Epifagus virginiana GN=rps8 PE=3 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 2.218e-45 Identity = 97/136 (71.32%), Postives = 106/136 (77.94%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG+DTI +II SIRNAD RK VRI STNITEN VKIL EGFIENARK + K + LTLRHRRN K PY ILNLKRISRPGLRIY N ++IP IL G+GIVIL TSRGIMTDR ARL+ IGGE+LCYIW Sbjct: 1 MGRDTILEIINSIRNADRGRKRVVRITSTNITENFVKILFIEGFIENARK--HREKNKYYFTLTLRHRRNSKRPYINILNLKRISRPGLRIYSNSQQIPLILGGIGIVILYTSRGIMTDREARLKGIGGELLCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CUSGR (30S ribosomal protein S8, plastid OS=Cuscuta gronovii GN=rps8 PE=3 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 4.942e-45 Identity = 92/136 (67.65%), Postives = 112/136 (82.35%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG+DTIA+++T IRNA+M+ K V+I S+NITEN++K+LLREGF+EN RK EN N FLVLTLRH++ +KGP ILNLK+ISRPG RIY ++IPRIL G+GIVILSTS GI+TDR ARLE IGGEILCYIW Sbjct: 1 MGRDTIAEVLTVIRNANMDGKKMVKIPSSNITENIIKLLLREGFLENVRKHYENGNY--FLVLTLRHQKTKKGPVTNILNLKQISRPGRRIYSMSKKIPRILGGIGIVILSTSHGILTDREARLEGIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CUSOB (30S ribosomal protein S8, plastid OS=Cuscuta obtusiflora GN=rps8 PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 6.454e-45 Identity = 91/136 (66.91%), Postives = 112/136 (82.35%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M +DTIA+++T IRNA+M+ K TV+I S+NITEN++K+LLREGF+EN RK EN N FLVLTLRH++ +KG + ILNLK+ISRPG RIY ++IPRIL G+GIVILSTS GI+TDR ARLE IGGEILCYIW Sbjct: 1 MSRDTIAEVLTVIRNANMDGKKTVKIPSSNITENIIKLLLREGFLENVRKHYENGNY--FLVLTLRHQKTKKGTFTNILNLKKISRPGRRIYSTSKKIPRILGGIGIVILSTSHGILTDREARLEGIGGEILCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PINKO (30S ribosomal protein S8, chloroplastic OS=Pinus koraiensis GN=rps8 PE=3 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 4.329e-41 Identity = 84/136 (61.76%), Postives = 108/136 (79.41%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DTIA++ITSIRNADM KGTVR+ +TNIT+N+ +ILLREGFIE+ R+ + +K FL+ T ++RR +K Y + KR S+PGLRIY NYR IP++L GMGIVILSTS+GI+TDR AR ++IGGEILCY+W Sbjct: 1 MGNDTIANLITSIRNADMVEKGTVRVTATNITKNIGRILLREGFIEDVRE--HQEGQKSFLISTSKYRRRKKRTY--MTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKKIGGEILCYVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PINTH (30S ribosomal protein S8, chloroplastic OS=Pinus thunbergii GN=rps8 PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.148e-40 Identity = 83/136 (61.03%), Postives = 107/136 (78.68%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DTI ++ITSIRNADM KGTVR+ +TNIT+N+ +ILLREGFIE+ R+ + +K FL+ T ++RR +K Y + KR S+PGLRIY NYR IP++L GMGIVILSTS+GI+TDR AR ++IGGEILCY+W Sbjct: 1 MGNDTITNLITSIRNADMVEKGTVRVTATNITKNIGRILLREGFIEDVRE--HQEGQKYFLISTSKYRRRKKRTY--MTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKKIGGEILCYVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_JASNU (30S ribosomal protein S8, chloroplastic OS=Jasminum nudiflorum GN=rps8 PE=3 SV=1) HSP 1 Score: 165.622 bits (418), Expect = 2.806e-40 Identity = 91/136 (66.91%), Postives = 101/136 (74.26%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M +DTIA+I+TSIRNA M+RK VRIASTNITEN+VKIL REGFIEN RK + K FL+L L+ R R LKRISRP LRIY N +RIPRI GMGIVILSTSRGIMTDR ARL +GGEILC IW Sbjct: 1 MCRDTIAEILTSIRNAYMDRKRVVRIASTNITENIVKILFREGFIENVRK--HREKNKSFLILNLQWNRKRLHKNLFSFKLKRISRPSLRIYSNSQRIPRIFGGMGIVILSTSRGIMTDREARLHGMGGEILCCIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PHYPA (30S ribosomal protein S8, chloroplastic OS=Physcomitrella patens GN=rps8 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 6.251e-40 Identity = 83/136 (61.03%), Postives = 110/136 (80.88%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DTIA++ITSIRNA++ + TV++ +TNIT+N+ KILL+EGFIEN R+ E+KN FL+ TL+++ +K PY I L+RIS+PGLRIY N++ IP++L GMGIVILSTS GIMTDR AR ++IGGEILCY+W Sbjct: 1 MGNDTIANMITSIRNANLEKTKTVQVPATNITKNIGKILLQEGFIENFREHEESKNC--FLIFTLKYQGKKKKPY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSEGIMTDREAREKKIGGEILCYVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ANTFO (30S ribosomal protein S8, chloroplastic OS=Anthoceros formosae GN=rps8 PE=2 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 9.027e-39 Identity = 80/136 (58.82%), Postives = 105/136 (77.21%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG D IA++IT+IRNA++ R TV + +TN+T N+ KILLREGFIE+ + ENKN FL+ L++R ++ PY I L+RIS+PGLRIY NY+ IPR+L G GIVILSTSRGI+TDR AR +++GGEILCY+W Sbjct: 1 MGNDIIANMITAIRNANLGRAETVEVPATNLTRNIAKILLREGFIESFSEHQENKNS--FLIFILKYRGKKRKPY--ITTLRRISKPGLRIYSNYQEIPRVLGGTGIVILSTSRGIITDREARQKQVGGEILCYVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ANGEV (30S ribosomal protein S8, chloroplastic OS=Angiopteris evecta GN=rps8 PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.179e-38 Identity = 83/136 (61.03%), Postives = 107/136 (78.68%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M DT+A++ITSIRNA++ TVRI +TN T++V KILL+EGFI N R+ +N + FL+LTL++R +K PY I NLKRIS+PGLRIY N+R IP++L GMGIVILSTS GI+TDR AR ++IGGEILCY+W Sbjct: 1 MVNDTVANMITSIRNANVIEATTVRIPATNTTKDVGKILLQEGFITNLRE--HKENTRSFLILTLKYRGRKKKPY--ITNLKRISKPGLRIYSNHREIPKVLGGMGIVILSTSSGIVTDREARQKQIGGEILCYVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CYCTA (30S ribosomal protein S8, chloroplastic OS=Cycas taitungensis GN=rps8 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.540e-38 Identity = 84/135 (62.22%), Postives = 107/135 (79.26%), Query Frame = -2 Query: 73 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 477 MG DTIA+IITSIRNAD+ +K TVRI +TN T+NVV+ILL+EGFIE+AR+ + +K F VLTLR+R ++ Y I KR S+PGLRIY N +++P++L GMG+VILSTS+GIMTDR AR RIGGEILCY+ Sbjct: 1 MGNDTIANIITSIRNADIVKKKTVRIIATNTTKNVVRILLQEGFIEDARE--HREGQKSFSVLTLRYRGRKEKTY--ITTSKRTSKPGLRIYSNSQKVPKVLGGMGVVILSTSQGIMTDREARRRRIGGEILCYV 131 The following BLAST results are available for this feature:
BLAST of CX069956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069956 ID=CX069956; Name=CX069956; organism=Citrus sinensis; type=EST; length=793bpback to top |