CX069956

Overview
NameCX069956
Unique NameCX069956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_EPIVI (30S ribosomal protein S8, plastid OS=Epifagus virginiana GN=rps8 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.218e-45
Identity = 97/136 (71.32%), Postives = 106/136 (77.94%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTI +II SIRNAD  RK  VRI STNITEN VKIL  EGFIENARK    +  K +  LTLRHRRN K PY  ILNLKRISRPGLRIY N ++IP IL G+GIVIL TSRGIMTDR ARL+ IGGE+LCYIW
Sbjct:    1 MGRDTILEIINSIRNADRGRKRVVRITSTNITENFVKILFIEGFIENARK--HREKNKYYFTLTLRHRRNSKRPYINILNLKRISRPGLRIYSNSQQIPLILGGIGIVILYTSRGIMTDREARLKGIGGELLCYIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CUSGR (30S ribosomal protein S8, plastid OS=Cuscuta gronovii GN=rps8 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.942e-45
Identity = 92/136 (67.65%), Postives = 112/136 (82.35%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG+DTIA+++T IRNA+M+ K  V+I S+NITEN++K+LLREGF+EN RK  EN N   FLVLTLRH++ +KGP   ILNLK+ISRPG RIY   ++IPRIL G+GIVILSTS GI+TDR ARLE IGGEILCYIW
Sbjct:    1 MGRDTIAEVLTVIRNANMDGKKMVKIPSSNITENIIKLLLREGFLENVRKHYENGNY--FLVLTLRHQKTKKGPVTNILNLKQISRPGRRIYSMSKKIPRILGGIGIVILSTSHGILTDREARLEGIGGEILCYIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CUSOB (30S ribosomal protein S8, plastid OS=Cuscuta obtusiflora GN=rps8 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 6.454e-45
Identity = 91/136 (66.91%), Postives = 112/136 (82.35%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M +DTIA+++T IRNA+M+ K TV+I S+NITEN++K+LLREGF+EN RK  EN N   FLVLTLRH++ +KG +  ILNLK+ISRPG RIY   ++IPRIL G+GIVILSTS GI+TDR ARLE IGGEILCYIW
Sbjct:    1 MSRDTIAEVLTVIRNANMDGKKTVKIPSSNITENIIKLLLREGFLENVRKHYENGNY--FLVLTLRHQKTKKGTFTNILNLKKISRPGRRIYSTSKKIPRILGGIGIVILSTSHGILTDREARLEGIGGEILCYIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PINKO (30S ribosomal protein S8, chloroplastic OS=Pinus koraiensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.329e-41
Identity = 84/136 (61.76%), Postives = 108/136 (79.41%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DTIA++ITSIRNADM  KGTVR+ +TNIT+N+ +ILLREGFIE+ R+    + +K FL+ T ++RR +K  Y  +   KR S+PGLRIY NYR IP++L GMGIVILSTS+GI+TDR AR ++IGGEILCY+W
Sbjct:    1 MGNDTIANLITSIRNADMVEKGTVRVTATNITKNIGRILLREGFIEDVRE--HQEGQKSFLISTSKYRRRKKRTY--MTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKKIGGEILCYVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PINTH (30S ribosomal protein S8, chloroplastic OS=Pinus thunbergii GN=rps8 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.148e-40
Identity = 83/136 (61.03%), Postives = 107/136 (78.68%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DTI ++ITSIRNADM  KGTVR+ +TNIT+N+ +ILLREGFIE+ R+    + +K FL+ T ++RR +K  Y  +   KR S+PGLRIY NYR IP++L GMGIVILSTS+GI+TDR AR ++IGGEILCY+W
Sbjct:    1 MGNDTITNLITSIRNADMVEKGTVRVTATNITKNIGRILLREGFIEDVRE--HQEGQKYFLISTSKYRRRKKRTY--MTTSKRTSKPGLRIYSNYREIPKVLGGMGIVILSTSQGILTDREARQKKIGGEILCYVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_JASNU (30S ribosomal protein S8, chloroplastic OS=Jasminum nudiflorum GN=rps8 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.806e-40
Identity = 91/136 (66.91%), Postives = 101/136 (74.26%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M +DTIA+I+TSIRNA M+RK  VRIASTNITEN+VKIL REGFIEN RK    +  K FL+L L+  R R         LKRISRP LRIY N +RIPRI  GMGIVILSTSRGIMTDR ARL  +GGEILC IW
Sbjct:    1 MCRDTIAEILTSIRNAYMDRKRVVRIASTNITENIVKILFREGFIENVRK--HREKNKSFLILNLQWNRKRLHKNLFSFKLKRISRPSLRIYSNSQRIPRIFGGMGIVILSTSRGIMTDREARLHGMGGEILCCIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PHYPA (30S ribosomal protein S8, chloroplastic OS=Physcomitrella patens GN=rps8 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 6.251e-40
Identity = 83/136 (61.03%), Postives = 110/136 (80.88%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DTIA++ITSIRNA++ +  TV++ +TNIT+N+ KILL+EGFIEN R+  E+KN   FL+ TL+++  +K PY  I  L+RIS+PGLRIY N++ IP++L GMGIVILSTS GIMTDR AR ++IGGEILCY+W
Sbjct:    1 MGNDTIANMITSIRNANLEKTKTVQVPATNITKNIGKILLQEGFIENFREHEESKNC--FLIFTLKYQGKKKKPY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSEGIMTDREAREKKIGGEILCYVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ANTFO (30S ribosomal protein S8, chloroplastic OS=Anthoceros formosae GN=rps8 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.027e-39
Identity = 80/136 (58.82%), Postives = 105/136 (77.21%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG D IA++IT+IRNA++ R  TV + +TN+T N+ KILLREGFIE+  +  ENKN   FL+  L++R  ++ PY  I  L+RIS+PGLRIY NY+ IPR+L G GIVILSTSRGI+TDR AR +++GGEILCY+W
Sbjct:    1 MGNDIIANMITAIRNANLGRAETVEVPATNLTRNIAKILLREGFIESFSEHQENKNS--FLIFILKYRGKKRKPY--ITTLRRISKPGLRIYSNYQEIPRVLGGTGIVILSTSRGIITDREARQKQVGGEILCYVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_ANGEV (30S ribosomal protein S8, chloroplastic OS=Angiopteris evecta GN=rps8 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.179e-38
Identity = 83/136 (61.03%), Postives = 107/136 (78.68%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M  DT+A++ITSIRNA++    TVRI +TN T++V KILL+EGFI N R+    +N + FL+LTL++R  +K PY  I NLKRIS+PGLRIY N+R IP++L GMGIVILSTS GI+TDR AR ++IGGEILCY+W
Sbjct:    1 MVNDTVANMITSIRNANVIEATTVRIPATNTTKDVGKILLQEGFITNLRE--HKENTRSFLILTLKYRGRKKKPY--ITNLKRISKPGLRIYSNHREIPKVLGGMGIVILSTSSGIVTDREARQKQIGGEILCYVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CYCTA (30S ribosomal protein S8, chloroplastic OS=Cycas taitungensis GN=rps8 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.540e-38
Identity = 84/135 (62.22%), Postives = 107/135 (79.26%), Query Frame = -2
Query:   73 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYI 477
            MG DTIA+IITSIRNAD+ +K TVRI +TN T+NVV+ILL+EGFIE+AR+    + +K F VLTLR+R  ++  Y  I   KR S+PGLRIY N +++P++L GMG+VILSTS+GIMTDR AR  RIGGEILCY+
Sbjct:    1 MGNDTIANIITSIRNADIVKKKTVRIIATNTTKNVVRILLQEGFIEDARE--HREGQKSFSVLTLRYRGRKEKTY--ITTSKRTSKPGLRIYSNSQKVPKVLGGMGVVILSTSQGIMTDREARRRRIGGEILCYV 131          
The following BLAST results are available for this feature:
BLAST of CX069956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_EPIVI2.218e-4571.3230S ribosomal protein S8, plastid OS=Epifagus virg... [more]
RR8_CUSGR4.942e-4567.6530S ribosomal protein S8, plastid OS=Cuscuta grono... [more]
RR8_CUSOB6.454e-4566.9130S ribosomal protein S8, plastid OS=Cuscuta obtus... [more]
RR8_PINKO4.329e-4161.7630S ribosomal protein S8, chloroplastic OS=Pinus k... [more]
RR8_PINTH2.148e-4061.0330S ribosomal protein S8, chloroplastic OS=Pinus t... [more]
RR8_JASNU2.806e-4066.9130S ribosomal protein S8, chloroplastic OS=Jasminu... [more]
RR8_PHYPA6.251e-4061.0330S ribosomal protein S8, chloroplastic OS=Physcom... [more]
RR8_ANTFO9.027e-3958.8230S ribosomal protein S8, chloroplastic OS=Anthoce... [more]
RR8_ANGEV1.179e-3861.0330S ribosomal protein S8, chloroplastic OS=Angiopt... [more]
RR8_CYCTA1.540e-3862.2230S ribosomal protein S8, chloroplastic OS=Cycas t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069956 ID=CX069956; Name=CX069956; organism=Citrus sinensis; type=EST; length=793bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCT
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