CX069956

Overview
NameCX069956
Unique NameCX069956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1652 contig Csv1_Contig1652:767..1559. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_MARPO (30S ribosomal protein S8, chloroplastic OS=Marchantia polymorpha GN=rps8 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38
Identity = 79/137 (57.66%), Postives = 108/137 (78.83%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENK-NKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DTIA++ITSIRNA++ +  TV++ +TNIT N+ KIL +EGFI+N    ++NK N K+ L+L L+++  +K  Y  I  L+RIS+PGLRIY N++ IP++L GMGIVILSTSRGIMTDR AR ++IGGE+LCY+W
Sbjct:    1 MGNDTIANMITSIRNANLGKIKTVQVPATNITRNIAKILFQEGFIDN---FIDNKQNTKDILILNLKYQGKKKKSY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSRGIMTDREARQKKIGGELLCYVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_HUPLU (30S ribosomal protein S8, chloroplastic OS=Huperzia lucidula GN=rps8 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.641e-38
Identity = 75/136 (55.15%), Postives = 108/136 (79.41%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DTIA++ITS+RNA++ ++ TVR+ +TNI  ++ KILL+EGF++N  +L E  N   F++LTL++R  ++ PY  I  L+RIS+PGLR+Y+NY++IP++L GMG+VI STS G MTDR AR ++IGGEILCY+W
Sbjct:    1 MGNDTIANMITSVRNANLGKEETVRVPATNINRSIGKILLQEGFVKNLGELREGTN--HFMILTLKYRGRKREPY--ITTLRRISKPGLRLYYNYKKIPKVLGGMGVVIPSTSCGTMTDREARQKQIGGEILCYVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_MUSAC (30S ribosomal protein S8, chloroplastic (Fragment) OS=Musa acuminata GN=rps8 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37
Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = -2
Query:  142 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILST 477
            MGKDTIADIITSIRNADMN+KGTVRIASTNITEN+VKILLREGFIEN RK    +  K FLV TLRHR+ RK  +R I  LKRISRPGLRIY +Y++IP+IL G+GIVILST
Sbjct:    1 MGKDTIADIITSIRNADMNKKGTVRIASTNITENIVKILLREGFIENVRK--HQEGNKYFLVSTLRHRKTRKRIHRTI--LKRISRPGLRIYSDYQQIPKILGGIGIVILST 108          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CHAGL (30S ribosomal protein S8, chloroplastic OS=Chaetosphaeridium globosum GN=rps8 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.925e-34
Identity = 75/136 (55.15%), Postives = 102/136 (75.00%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M  D IA++ITSIRNA++ +   + + +T IT+++ KILL+EGFI+N R+  EN   K FL+LTLR +R +      I  ++RIS+PGLRIY N++ IP++L G+GIVILSTS+GIM+DR AR  RIGGEILCYIW
Sbjct:    1 MTSDVIANMITSIRNANLRKIKVIELPATKITKSIGKILLQEGFIDNLREREENN--KNFLILTLRSQRRKHKA--SITTIRRISKPGLRIYSNHQEIPKVLGGIGIVILSTSQGIMSDRQARQNRIGGEILCYIW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CHAVU (30S ribosomal protein S8, chloroplastic OS=Chara vulgaris GN=rps8 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.694e-34
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M KDTI+++ITSIRN ++++   V+I +T    ++ KILL EGFIEN R++V +      L LTL+++   + PY  I  L+RIS+PGLR Y +Y+ IP+++ GMGIVILSTS+GI+TDR AR  RIGGE+LCYIW
Sbjct:    1 MSKDTISNMITSIRNGNLSKAKIVQIPATQTARSIAKILLDEGFIENFREVVISDKNYSLLTLTLKYQGRTREPY--ITTLRRISKPGLRSYSSYQDIPKVMGGMGIVILSTSQGIITDRQARQRRIGGEVLCYIW 134          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PSINU (30S ribosomal protein S8, chloroplastic OS=Psilotum nudum GN=rps8 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.491e-33
Identity = 72/136 (52.94%), Postives = 101/136 (74.26%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M  DTIAD+I+ +RNA+M +   VR+ +T IT+N+VKILL+EGFI++  K  + K  + F +LTL+++   + P+  I   KRIS+P LRIY NY++I RIL GMGI I+STS GIMTDR AR +R+GGEI+C++W
Sbjct:    1 MSHDTIADMISLVRNANMRKAVKVRVPATGITQNIVKILLQEGFIKDYMK--QEKRTRSFFILTLKYQGRVRKPH--ITAFKRISKPSLRIYSNYQKITRILGGMGIAIISTSSGIMTDREARQKRLGGEIICHVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_STAPU (30S ribosomal protein S8, chloroplastic OS=Staurastrum punctulatum GN=rps8 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.322e-33
Identity = 72/136 (52.94%), Postives = 101/136 (74.26%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            MG DT+A++IT IRNA++ +  TV I +TN   ++ KILL EGFI+  R+  E+   K  LV+TLR++  ++ PY  I  +K+IS+ GLR+Y N++ IPR+L GMGIVILSTS+GI+ DR AR ++IGGEILCY+W
Sbjct:    1 MGNDTLANMITCIRNANLRKTKTVEILATNTNRSIAKILLEEGFIDELRERQEDT--KRLLVITLRYQGRKRKPY--ITTVKQISKAGLRVYSNHKDIPRVLGGMGIVILSTSQGIIIDREARDKQIGGEILCYVW 132          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_GNEPA (30S ribosomal protein S8, chloroplastic OS=Gnetum parvifolium GN=rps8 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.153e-32
Identity = 72/133 (54.14%), Postives = 99/133 (74.44%), Query Frame = -2
Query:   70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468
            DTI ++ITSI+NA M +K TVR+ +T I EN  +ILL+EGFI N R+      +K FL+ TL++R+  +     I+ LKRISRPG RIY ++ +IP++L GMGIVIL TS+GIMTDR AR ++IGGE+LC++W
Sbjct:    2 DTITNLITSIKNAYMVKKQTVRVNATRINENFGRILLQEGFIRNIRE--HKDGQKFFLIFTLKYRKRGE----KIITLKRISRPGWRIYSDFPKIPKVLGGMGIVILFTSQGIMTDREARKKKIGGELLCFVW 128          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CHLAT (30S ribosomal protein S8, chloroplastic OS=Chlorokybus atmophyticus GN=rps8 PE=3 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.813e-32
Identity = 69/136 (50.74%), Postives = 99/136 (72.79%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M  DT+AD+IT IRNA++ R+  V++ ++N T ++  IL  EGF+E  +  +E  +    L++TL+++  R+ PY  I  LKRIS+PGLR+Y N R IPR+L G+GI I+STS+GIMTDR AR E++GGEILCY+W
Sbjct:    1 MVNDTVADMITRIRNANLVRQTNVQVIASNTTNSIASILKDEGFVEKIQT-IETDSGLSSLLITLKYQGKRRKPY--ITALKRISKPGLRVYANSREIPRVLGGIGIAIISTSKGIMTDRRARHEKVGGEILCYVW 133          
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_GRATL (30S ribosomal protein S8, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps8 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.823e-31
Identity = 66/136 (48.53%), Postives = 100/136 (73.53%), Query Frame = -2
Query:   70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477
            M  DTIAD++T IRNA++ +   V++ ST +T N++K+L  EGFI    ++ E+ NK  +L+++L+++  RK P   I +LKRIS+PGLR+Y NY+ +P++L G+GI I+STS+G+M+D  AR   +GGEILCYIW
Sbjct:    1 MINDTIADMLTRIRNANLAKHQIVQVCSTKMTRNIIKVLQEEGFIYKFEEIGEDNNK--YLLISLKYKGKRKKPV--ITSLKRISKPGLRVYANYKELPKVLGGIGIAIISTSKGVMSDYHARHYGLGGEILCYIW 132          
The following BLAST results are available for this feature:
BLAST of CX069956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR8_MARPO4.480e-3857.6630S ribosomal protein S8, chloroplastic OS=Marchan... [more]
RR8_HUPLU7.641e-3855.1530S ribosomal protein S8, chloroplastic OS=Huperzi... [more]
RR8_MUSAC1.303e-3775.8930S ribosomal protein S8, chloroplastic (Fragment)... [more]
RR8_CHAGL3.925e-3455.1530S ribosomal protein S8, chloroplastic OS=Chaetos... [more]
RR8_CHAVU6.694e-3452.9430S ribosomal protein S8, chloroplastic OS=Chara v... [more]
RR8_PSINU1.491e-3352.9430S ribosomal protein S8, chloroplastic OS=Psilotu... [more]
RR8_STAPU3.322e-3352.9430S ribosomal protein S8, chloroplastic OS=Stauras... [more]
RR8_GNEPA2.153e-3254.1430S ribosomal protein S8, chloroplastic OS=Gnetum ... [more]
RR8_CHLAT2.813e-3250.7430S ribosomal protein S8, chloroplastic OS=Chlorok... [more]
RR8_GRATL1.823e-3148.5330S ribosomal protein S8, chloroplastic OS=Gracila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13H08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13H08-O15-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069956 ID=CX069956; Name=CX069956; organism=Citrus sinensis; type=EST; length=793bp
AATCCTCCCTTTTTTTTTCTCACAACATAAAAGTAAGCTCCAAATACAAT
TCGGATAGCAGAATAATTACCATATATAACACAAAATTTCTCCACCGATT
CTTTCCAGTCGAGCCGCTCGGTCTGTCATTATACCCCGAGAAGTAGAGAG
AATTACAATCCCCATCCCATCTAAAATTCTAGGAATTCGTCGATAGTTAA
AATAGATTCGTAGACCGGGTCGACTGATTCGTTTTAAATTTAAAATGGGT
CTATACGGCCCTTTCCTATTCCTTCGATGTCGTAGGGTTAAAACCAAAAA
CTCTTTTTTGTTTTTGTTTTCCACGAGTTTCCTTGCGTTTTCGATAAAAC
CCTCTCGCAAAAGGATTTTAACAACGTTTTCGGTGATGTTAGTAGATGCT
ATTCGAACCGTTCCCTTTCTATTCATGTCAGCATTTCGTATAGAAGTTAT
TATGTCAGCAATAGTGTCCTTGCCCATGATAAACTGAAAATTTTGTTGCT
TCCAAATTTTGATATAATCAACATGTTCTTTTTTTTATGAAAATTATTAA
AAGTATATGCGTGAGACATACTCTACTAAATTTTGATTTATCTATTTTAT
TTTCATACTATCACTATATCGCGGTCCCCTCTTATAATACTTCAGGTGCT
AATGAAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGGGCGATCGC
ACCAAAAACTCGAGTTCCCTTTGGATTTCCTTCGTGATCAATGACAACTG
CAGCATTGTCATCGTACCGTATTATCATACCGTTATCACGTCT
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