CX069956
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_MARPO (30S ribosomal protein S8, chloroplastic OS=Marchantia polymorpha GN=rps8 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 4.480e-38 Identity = 79/137 (57.66%), Postives = 108/137 (78.83%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENK-NKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DTIA++ITSIRNA++ + TV++ +TNIT N+ KIL +EGFI+N ++NK N K+ L+L L+++ +K Y I L+RIS+PGLRIY N++ IP++L GMGIVILSTSRGIMTDR AR ++IGGE+LCY+W Sbjct: 1 MGNDTIANMITSIRNANLGKIKTVQVPATNITRNIAKILFQEGFIDN---FIDNKQNTKDILILNLKYQGKKKKSY--ITTLRRISKPGLRIYSNHKEIPKVLGGMGIVILSTSRGIMTDREARQKKIGGELLCYVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_HUPLU (30S ribosomal protein S8, chloroplastic OS=Huperzia lucidula GN=rps8 PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 7.641e-38 Identity = 75/136 (55.15%), Postives = 108/136 (79.41%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DTIA++ITS+RNA++ ++ TVR+ +TNI ++ KILL+EGF++N +L E N F++LTL++R ++ PY I L+RIS+PGLR+Y+NY++IP++L GMG+VI STS G MTDR AR ++IGGEILCY+W Sbjct: 1 MGNDTIANMITSVRNANLGKEETVRVPATNINRSIGKILLQEGFVKNLGELREGTN--HFMILTLKYRGRKREPY--ITTLRRISKPGLRLYYNYKKIPKVLGGMGVVIPSTSCGTMTDREARQKQIGGEILCYVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_MUSAC (30S ribosomal protein S8, chloroplastic (Fragment) OS=Musa acuminata GN=rps8 PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.303e-37 Identity = 85/112 (75.89%), Postives = 95/112 (84.82%), Query Frame = -2 Query: 142 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILST 477 MGKDTIADIITSIRNADMN+KGTVRIASTNITEN+VKILLREGFIEN RK + K FLV TLRHR+ RK +R I LKRISRPGLRIY +Y++IP+IL G+GIVILST Sbjct: 1 MGKDTIADIITSIRNADMNKKGTVRIASTNITENIVKILLREGFIENVRK--HQEGNKYFLVSTLRHRKTRKRIHRTI--LKRISRPGLRIYSDYQQIPKILGGIGIVILST 108
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CHAGL (30S ribosomal protein S8, chloroplastic OS=Chaetosphaeridium globosum GN=rps8 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 3.925e-34 Identity = 75/136 (55.15%), Postives = 102/136 (75.00%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M D IA++ITSIRNA++ + + + +T IT+++ KILL+EGFI+N R+ EN K FL+LTLR +R + I ++RIS+PGLRIY N++ IP++L G+GIVILSTS+GIM+DR AR RIGGEILCYIW Sbjct: 1 MTSDVIANMITSIRNANLRKIKVIELPATKITKSIGKILLQEGFIDNLREREENN--KNFLILTLRSQRRKHKA--SITTIRRISKPGLRIYSNHQEIPKVLGGIGIVILSTSQGIMSDRQARQNRIGGEILCYIW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CHAVU (30S ribosomal protein S8, chloroplastic OS=Chara vulgaris GN=rps8 PE=3 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 6.694e-34 Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M KDTI+++ITSIRN ++++ V+I +T ++ KILL EGFIEN R++V + L LTL+++ + PY I L+RIS+PGLR Y +Y+ IP+++ GMGIVILSTS+GI+TDR AR RIGGE+LCYIW Sbjct: 1 MSKDTISNMITSIRNGNLSKAKIVQIPATQTARSIAKILLDEGFIENFREVVISDKNYSLLTLTLKYQGRTREPY--ITTLRRISKPGLRSYSSYQDIPKVMGGMGIVILSTSQGIITDRQARQRRIGGEVLCYIW 134
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_PSINU (30S ribosomal protein S8, chloroplastic OS=Psilotum nudum GN=rps8 PE=3 SV=1) HSP 1 Score: 143.28 bits (360), Expect = 1.491e-33 Identity = 72/136 (52.94%), Postives = 101/136 (74.26%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M DTIAD+I+ +RNA+M + VR+ +T IT+N+VKILL+EGFI++ K + K + F +LTL+++ + P+ I KRIS+P LRIY NY++I RIL GMGI I+STS GIMTDR AR +R+GGEI+C++W Sbjct: 1 MSHDTIADMISLVRNANMRKAVKVRVPATGITQNIVKILLQEGFIKDYMK--QEKRTRSFFILTLKYQGRVRKPH--ITAFKRISKPSLRIYSNYQKITRILGGMGIAIISTSSGIMTDREARQKRLGGEIICHVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_STAPU (30S ribosomal protein S8, chloroplastic OS=Staurastrum punctulatum GN=rps8 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.322e-33 Identity = 72/136 (52.94%), Postives = 101/136 (74.26%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 MG DT+A++IT IRNA++ + TV I +TN ++ KILL EGFI+ R+ E+ K LV+TLR++ ++ PY I +K+IS+ GLR+Y N++ IPR+L GMGIVILSTS+GI+ DR AR ++IGGEILCY+W Sbjct: 1 MGNDTLANMITCIRNANLRKTKTVEILATNTNRSIAKILLEEGFIDELRERQEDT--KRLLVITLRYQGRKRKPY--ITTVKQISKAGLRVYSNHKDIPRVLGGMGIVILSTSQGIIIDREARDKQIGGEILCYVW 132
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_GNEPA (30S ribosomal protein S8, chloroplastic OS=Gnetum parvifolium GN=rps8 PE=3 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.153e-32 Identity = 72/133 (54.14%), Postives = 99/133 (74.44%), Query Frame = -2 Query: 70 DTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 468 DTI ++ITSI+NA M +K TVR+ +T I EN +ILL+EGFI N R+ +K FL+ TL++R+ + I+ LKRISRPG RIY ++ +IP++L GMGIVIL TS+GIMTDR AR ++IGGE+LC++W Sbjct: 2 DTITNLITSIKNAYMVKKQTVRVNATRINENFGRILLQEGFIRNIRE--HKDGQKFFLIFTLKYRKRGE----KIITLKRISRPGWRIYSDFPKIPKVLGGMGIVILFTSQGIMTDREARKKKIGGELLCFVW 128
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_CHLAT (30S ribosomal protein S8, chloroplastic OS=Chlorokybus atmophyticus GN=rps8 PE=3 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.813e-32 Identity = 69/136 (50.74%), Postives = 99/136 (72.79%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M DT+AD+IT IRNA++ R+ V++ ++N T ++ IL EGF+E + +E + L++TL+++ R+ PY I LKRIS+PGLR+Y N R IPR+L G+GI I+STS+GIMTDR AR E++GGEILCY+W Sbjct: 1 MVNDTVADMITRIRNANLVRQTNVQVIASNTTNSIASILKDEGFVEKIQT-IETDSGLSSLLITLKYQGKRRKPY--ITALKRISKPGLRVYANSREIPRVLGGIGIAIISTSKGIMTDRRARHEKVGGEILCYVW 133
BLAST of CX069956 vs. ExPASy Swiss-Prot
Match: RR8_GRATL (30S ribosomal protein S8, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rps8 PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.823e-31 Identity = 66/136 (48.53%), Postives = 100/136 (73.53%), Query Frame = -2 Query: 70 MGKDTIADIITSIRNADMNRKGTVRIASTNITENVVKILLREGFIENARKLVENKNKKEFLVLTLRHRRNRKGPYRPILNLKRISRPGLRIYFNYRRIPRILDGMGIVILSTSRGIMTDRAARLERIGGEILCYIW 477 M DTIAD++T IRNA++ + V++ ST +T N++K+L EGFI ++ E+ NK +L+++L+++ RK P I +LKRIS+PGLR+Y NY+ +P++L G+GI I+STS+G+M+D AR +GGEILCYIW Sbjct: 1 MINDTIADMLTRIRNANLAKHQIVQVCSTKMTRNIIKVLQEEGFIYKFEEIGEDNNK--YLLISLKYKGKRKKPV--ITSLKRISKPGLRVYANYKELPKVLGGIGIAIISTSKGVMSDYHARHYGLGGEILCYIW 132 The following BLAST results are available for this feature:
BLAST of CX069956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX069956 ID=CX069956; Name=CX069956; organism=Citrus sinensis; type=EST; length=793bpback to top |