CX069945

Overview
NameCX069945
Unique NameCX069945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 46/71 (64.79%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G   A++  P     N+  KI+DKE I  DQQR IFAGK+LE+GRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX069945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
UBIQ_OPHHA5.465e-1156.34Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_NICSY5.465e-1169.23Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MOUSE5.465e-1156.34Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE5.465e-1156.34Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MAIZE5.465e-1169.23Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_MACFA5.465e-1156.34Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_LUPPO5.465e-1169.23Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]
UBIQ_LUPAL5.465e-1169.23Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS5.465e-1169.23Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_LEIMA5.465e-1156.34Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G11-M21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069945 ID=CX069945; Name=CX069945; organism=Citrus sinensis; type=EST; length=743bp
TTTTCAGATAATGAAGGGTATTATTATTTCACTGGCAAACGAACACATAT
CCGAATGCTTATACACGTCCAGATACATTTTCTACGCTTATACACGTCCA
GATACATTTTCTACGCTTATACACGTCCAGATACATTTTCTACGCTTATA
CACGTCCAGATACATTCTCAAAGGTCAAACCTCAGGAGAGGCATCCACAA
ACTACCCCAACCAAACACAAACCAAAAGATCTGCCTCTGCTGGTCCGGTG
GAGTTCCCTTCTTGTCCTGGATCTTAGCCTTGACATTGTCGATTGTGTCA
GAGCTTTCGACCTTCAAATTTATGTTTTGCCGGTCAGGGTTTTCACAAAT
ATCTGCATGCCACCCCTGAAACGGCGGACCGAATGAAGGGTTGACCCGTG
GATGTTGTAGTCTACAAGTGTGCGACCATCCTCGAGTCGTTTGCCAGCAA
AGATGAACCTCTGCTGGTCTCGTAGGATCTCTTCCTTGTCCTCGATCTTG
ACAGAGAGATTAGGAGGCCTTTCATCTATTGCTGGCCTATTGCCAAGCAA
TAACTTTTTATCTTCTTCTCAAGTCTGAAGGGGAGCCAGTTCGTGATCAT
CCTGTCATAGCTCGCCTTGTAGAGATCAAGGGATTGCTGGATGAGATTAA
ACAACTCGATGAGAATCTTCCATCAGAGTTAGATGAGATTTTGAAGAATG
ACCATTCAGCTGAAGCTTCGGCAAAGTTGGTTAGAGAGAGTGC
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