CX069945

Overview
NameCX069945
Unique NameCX069945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 40/71 (56.34%), Postives = 45/71 (63.38%), Query Frame = -2 
Query:  359 KLLLGNRPAIDERPP----NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 556
            K L G    ++  P     N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:    6 KTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX069945 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = -2 
Query:  359 NLSVKIEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 511
            N+  KI+DKE I  DQQR IFAGK+LEDGRTL DYNI   STLH V R RGG
Sbjct:   25 NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX069945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
UBIQ_DESAN5.465e-1169.23Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA5.465e-1169.23Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_CRIGR5.465e-1156.34Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHLRE5.465e-1169.23Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_CHICK5.465e-1156.34Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA5.465e-1156.34Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]
UBIQ_CAVPO5.465e-1156.34Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA5.465e-1156.34Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR5.465e-1156.34Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BRARA5.465e-1169.23Ubiquitin OS=Brassica rapa PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G11-M21-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069945 ID=CX069945; Name=CX069945; organism=Citrus sinensis; type=EST; length=743bp
TTTTCAGATAATGAAGGGTATTATTATTTCACTGGCAAACGAACACATAT
CCGAATGCTTATACACGTCCAGATACATTTTCTACGCTTATACACGTCCA
GATACATTTTCTACGCTTATACACGTCCAGATACATTTTCTACGCTTATA
CACGTCCAGATACATTCTCAAAGGTCAAACCTCAGGAGAGGCATCCACAA
ACTACCCCAACCAAACACAAACCAAAAGATCTGCCTCTGCTGGTCCGGTG
GAGTTCCCTTCTTGTCCTGGATCTTAGCCTTGACATTGTCGATTGTGTCA
GAGCTTTCGACCTTCAAATTTATGTTTTGCCGGTCAGGGTTTTCACAAAT
ATCTGCATGCCACCCCTGAAACGGCGGACCGAATGAAGGGTTGACCCGTG
GATGTTGTAGTCTACAAGTGTGCGACCATCCTCGAGTCGTTTGCCAGCAA
AGATGAACCTCTGCTGGTCTCGTAGGATCTCTTCCTTGTCCTCGATCTTG
ACAGAGAGATTAGGAGGCCTTTCATCTATTGCTGGCCTATTGCCAAGCAA
TAACTTTTTATCTTCTTCTCAAGTCTGAAGGGGAGCCAGTTCGTGATCAT
CCTGTCATAGCTCGCCTTGTAGAGATCAAGGGATTGCTGGATGAGATTAA
ACAACTCGATGAGAATCTTCCATCAGAGTTAGATGAGATTTTGAAGAATG
ACCATTCAGCTGAAGCTTCGGCAAAGTTGGTTAGAGAGAGTGC
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