CX069942

Overview
NameCX069942
Unique NameCX069942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL32_ORYSJ (Putative germin-like protein 3-2 OS=Oryza sativa subsp. japonica GN=Os03g0651800 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.193e-13
Identity = 34/86 (39.53%), Postives = 50/86 (58.14%), Query Frame = 2
Query:   11 VGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG VTT N  F++ ++ G VF+ PR L+HFQ N G   A  I  FN+Q PG      TLF   PP+P++ L ++ +V   ++  I+
Sbjct:  130 VGFVTTANKLFTRTVSKGEVFVFPRGLVHFQRNSGNTSALAIAAFNSQLPGTQSIADTLFGAAPPLPSDTLARAFQVDGGMVESIK 215          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.048e-12
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 2
Query:    5 VLVGLVTTN--NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVI 256
            +LVG VT+N  N  FSKVL  G VF+ P  LIHFQ N+GK PA      ++QNPGV     T+F   P I   +L K+ +++  V+
Sbjct:  129 LLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGANPAINPTILAKAFQLNPRVV 214          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.675e-12
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 2
Query:    5 VLVGLVTTN--NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVI 256
            +LVG VT+N  N  F+KVL  G VF+ P  LIHFQ N+GK PA      ++QNPGV     T+F   P I   +L K+ +V   V+
Sbjct:  129 LLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAFQVDPRVV 214          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL24_ARATH (Germin-like protein subfamily 2 member 4 OS=Arabidopsis thaliana GN=GLP10 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.959e-12
Identity = 37/87 (42.53%), Postives = 50/87 (57.47%), Query Frame = 2
Query:   11 VGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKG-PATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG +TT N  F+K +  G VF+ PR LIH+Q N  K  PA+ I  FN+Q PG      TLF  TP IP+ +LT + ++    I  I+
Sbjct:  126 VGFITTANKLFAKTVKKGEVFVFPRGLIHYQKNNDKAKPASVISAFNSQLPGTQSIAATLFTATPAIPDHVLTTTFQIGTKEIEKIK 212          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.782e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 2
Query:   11 VGLVTTN-NTFFSKVLTPGMVFLIPRALIHFQLNVGKG-PATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIRKARASN 286
            VG VT+N N  FSKV+  G VF+ P+A+IHFQ+N+    PA      ++QNPGV    + +F +TPPI +++L K+ +V   VI+ ++   + N
Sbjct:  129 VGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQVEKKVIDWLKSQFSEN 222          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 33/86 (38.37%), Postives = 48/86 (55.81%), Query Frame = 2
Query:   11 VGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG VTT N  F++ +  G VF+ PR L+HFQ N G  PA  I   N+Q PG       LF   PP+P++ L ++ +V   ++  I+
Sbjct:  130 VGFVTTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQVDGGMVEFIK 215          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL117_ARATH (Germin-like protein subfamily 1 member 17 OS=Arabidopsis thaliana GN=At5g39150 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   11 VGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGI 265
            VG V++N   N  F+KVL PG VF+ P  +IHFQ+N+GK PA      ++QN GV     T+F +TPPI  ++L ++ ++  +V+  +
Sbjct:  128 VGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDL 215          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = 2
Query:   11 VGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG V++N   N  F+KVL PG VF+ P  +IHFQLN+GK PA      ++QN GV     T+F + PPI  ELL ++ ++  +V+  ++
Sbjct:  128 VGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDANVVKELQ 216          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL115_ARATH (Germin-like protein subfamily 1 member 15 OS=Arabidopsis thaliana GN=At5g39120 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   11 VGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGI 265
            VG V++N   N  F+KVL PG VF+ P  +IHFQ+N+GK PA      ++QN GV     T+F +TPPI  ++L ++ ++  +V+  +
Sbjct:  128 VGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDL 215          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL114_ARATH (Germin-like protein subfamily 1 member 14 OS=Arabidopsis thaliana GN=At5g39110 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.734e-11
Identity = 35/88 (39.77%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   11 VGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGI 265
            VG V++N   N  F+KVL PG VF+ P  +IHFQ+N+GK PA      ++QN GV     T+F +TPPI  ++L ++ ++  +V+  +
Sbjct:  129 VGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNVVKDL 216          
The following BLAST results are available for this feature:
BLAST of CX069942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GL32_ORYSJ9.193e-1339.53Putative germin-like protein 3-2 OS=Oryza sativa s... [more]
GL111_ARATH2.048e-1244.19Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL110_ARATH2.675e-1244.19Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL24_ARATH5.959e-1242.53Germin-like protein subfamily 2 member 4 OS=Arabid... [more]
GL83_ORYSJ7.782e-1240.43Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL13_ORYSJ1.016e-1138.37Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL117_ARATH1.734e-1139.77Germin-like protein subfamily 1 member 17 OS=Arabi... [more]
GL116_ARATH1.734e-1141.57Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL115_ARATH1.734e-1139.77Germin-like protein subfamily 1 member 15 OS=Arabi... [more]
GL114_ARATH1.734e-1139.77Germin-like protein subfamily 1 member 14 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G10-M19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069942 ID=CX069942; Name=CX069942; organism=Citrus sinensis; type=EST; length=831bp
AAAGGTGCTTGTTGGGTTAGTAACAACTAATAATACCTTTTTCTCAAAGG
TTTTGACTCCCGGGATGGTGTTCTTAATTCCCAGAGCACTGATTCACTTC
CAGCTAAATGTTGGAAAGGGGCCGGCCACCTTTATACCTATTTTCAATAC
TCAAAATCCTGGCGTTTCGGACTCACTCACTACTCTTTTTGATACAACAC
CCCCAATTCCCAATGAATTGCTGACCAAATCTCTTCGAGTAAGTGATGAT
GTGATAAATGGCATCAGAAAAGCCCGGGCATCAAACTAGTAATCGGTCCA
GCTAGGTTAACATCCTGGGTGCTTGATCAATATGCTTTAGTGTGCCAACA
TATATATACTAATAAATGCGATTTATTTTATGTTACAATTATTGAATAAA
GAGTAAAGTCCAGACGACCAATAATTATTGAATAAGGAAAGCGAGATTTT
TTTTTTCTCATTTCTTCTTCTTTTACTTTTGATTTTTCCATGGCATTATC
TATGCAATTTGTTGCTTCCATCGGCCTCGTTCATTGGTATTTCCTTGTAG
GCTTCAAATAATCTTTTATAATCCGAATTTCATTCCTGTATTTCCAGCCT
CTCAATATCCATTAATGGTACCCCTGCAATAATTATTGAATAAAAAATGC
CTAATACTTATTAATTTTTTTGTCTTGTTAATTTTTTTTCATGGGTCATT
CTATTTGATATATACCGCGATAAAATAATTCGATAAATATGTCAAAAATA
AAATTACCGGTGAAATAGAAAACATACTGAAATCAAACCCGTTCATTGCT
TTATTATTTTTTTGTTCTCCCTATTCAACCG
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