CX069942

Overview
NameCX069942
Unique NameCX069942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4319 contig Csv1_Contig4319:446..1276. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 37/88 (42.05%), Postives = 56/88 (63.64%), Query Frame = 2
Query:   11 VGLVTTN-NTFFSKVLTPGMVFLIPRALIHFQLNVGKG-PATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG VT+N N  FSKV+  G  F+ P+A+IHFQ+N+    PA      N+QNPGV    + +F + PPI +++LTK+ +V   VI+ ++
Sbjct:  129 VGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDVLTKAFQVEKKVIDWLK 216          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   11 VGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG V++N   N  F+KVL PG VF+ P  +IHFQ+NVGK PA      ++QN GV     T+F + PPI  ELL ++ ++   V+  ++
Sbjct:  128 VGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQ 216          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL118_ARATH (Germin-like protein subfamily 1 member 18 OS=Arabidopsis thaliana GN=GLP2A PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.957e-11
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = 2
Query:   11 VGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG V++N   N  F+KVL PG VF+ P  +IHFQ+NVGK PA      ++QN GV     T+F + PPI  ELL ++ ++   V+  ++
Sbjct:  128 VGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGSNPPIYPELLARAFQLDASVVKELQ 216          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 2
Query:    2 KVLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            ++ VG +TT     SK +  G VF+ P+AL+HFQ N  K PA+ +  F++Q PG      +LF + PPIP++LL K+   +   I  I+
Sbjct:  124 RLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGSNPPIPDDLLAKAFGAAAPEIQKIK 212          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL113_ARATH (Germin-like protein subfamily 1 member 13 OS=Arabidopsis thaliana GN=GLP6 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.862e-11
Identity = 34/88 (38.64%), Postives = 55/88 (62.50%), Query Frame = 2
Query:   11 VGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGI 265
            VG V++N   N  F+KVL PG VF+ P  +IHFQ+N+GK PA      ++QN GV     T+F +TPPI  ++L ++ ++  +++  +
Sbjct:  129 VGFVSSNQDNNRLFAKVLYPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADTVFGSTPPINPDILAQAFQLDVNIVKDL 216          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.044e-11
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 2
Query:    5 VLVGLVTTNNTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VLVG +TTN T +SKV+ PG +F+IP  LIH++ NVGK     + +     P       TL  T P IPNE+L  + +     IN +R
Sbjct:  135 VLVGFLTTNYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLATKPAIPNEVLISAFKADSKTINMLR 222          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 39/89 (43.82%), Postives = 52/89 (58.43%), Query Frame = 2
Query:   11 VGLVTTN--NTFFSKVLTPGMVFLIPRALIHFQLNVG-KGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG VT+N  NT FSKVL  G VF+ P  LIHFQ N     PA  I   ++QNPGV      +F + PPI +E+L K+ +V    I+ ++
Sbjct:  127 VGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVGKGTIDWLQ 215          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 38/89 (42.70%), Postives = 52/89 (58.43%), Query Frame = 2
Query:   11 VGLVTTN--NTFFSKVLTPGMVFLIPRALIHFQLNVG-KGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG VT+N  NT FSKVL  G VF+ P+ LIHFQ N     PA  I   ++QNPG       +F + PPI +E+L K+ +V    I+ ++
Sbjct:  127 VGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQVEKGTIDWLQ 215          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 2
Query:   11 VGLVTTN-NTFFSKVLTPGMVFLIPRALIHFQLNVGKG-PATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIR 268
            VG VT+N N  FSKV+  G VF+ P+A+IHFQ+N+    PA      ++QNPGV    + +F + PPI +++LTK+ +V   +I+ ++
Sbjct:  129 VGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGSQPPISDDVLTKAFQVEKKLIDWLQ 216          
BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = 2
Query:    5 VLVGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGIRKARASN 286
            +LVG VT+N   N  FSKVL PG VF+ P  +IHFQ+NVG+  A       +QNPG       +F + P I  E+L K+ ++  +V+  +    +SN
Sbjct:  128 LLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNVVKYLEARFSSN 224          
The following BLAST results are available for this feature:
BLAST of CX069942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GL84_ORYSJ2.957e-1142.05Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL120_ARATH2.957e-1141.57Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL118_ARATH2.957e-1141.57Germin-like protein subfamily 1 member 18 OS=Arabi... [more]
GL23_ARATH3.862e-1138.20Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL113_ARATH3.862e-1138.64Germin-like protein subfamily 1 member 13 OS=Arabi... [more]
GLT3_ARATH5.044e-1140.91Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL89_ORYSJ8.604e-1143.82Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL85_ORYSJ8.604e-1142.70Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL812_ORYSJ8.604e-1140.91Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL17_ARATH8.604e-1139.18Germin-like protein subfamily 1 member 7 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G10-M19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069942 ID=CX069942; Name=CX069942; organism=Citrus sinensis; type=EST; length=831bp
AAAGGTGCTTGTTGGGTTAGTAACAACTAATAATACCTTTTTCTCAAAGG
TTTTGACTCCCGGGATGGTGTTCTTAATTCCCAGAGCACTGATTCACTTC
CAGCTAAATGTTGGAAAGGGGCCGGCCACCTTTATACCTATTTTCAATAC
TCAAAATCCTGGCGTTTCGGACTCACTCACTACTCTTTTTGATACAACAC
CCCCAATTCCCAATGAATTGCTGACCAAATCTCTTCGAGTAAGTGATGAT
GTGATAAATGGCATCAGAAAAGCCCGGGCATCAAACTAGTAATCGGTCCA
GCTAGGTTAACATCCTGGGTGCTTGATCAATATGCTTTAGTGTGCCAACA
TATATATACTAATAAATGCGATTTATTTTATGTTACAATTATTGAATAAA
GAGTAAAGTCCAGACGACCAATAATTATTGAATAAGGAAAGCGAGATTTT
TTTTTTCTCATTTCTTCTTCTTTTACTTTTGATTTTTCCATGGCATTATC
TATGCAATTTGTTGCTTCCATCGGCCTCGTTCATTGGTATTTCCTTGTAG
GCTTCAAATAATCTTTTATAATCCGAATTTCATTCCTGTATTTCCAGCCT
CTCAATATCCATTAATGGTACCCCTGCAATAATTATTGAATAAAAAATGC
CTAATACTTATTAATTTTTTTGTCTTGTTAATTTTTTTTCATGGGTCATT
CTATTTGATATATACCGCGATAAAATAATTCGATAAATATGTCAAAAATA
AAATTACCGGTGAAATAGAAAACATACTGAAATCAAACCCGTTCATTGCT
TTATTATTTTTTTGTTCTCCCTATTCAACCG
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