CX069942

Overview
NameCX069942
Unique NameCX069942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX069942 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.604e-11
Identity = 34/88 (38.64%), Postives = 54/88 (61.36%), Query Frame = 2 
Query:   11 VGLVTTN---NTFFSKVLTPGMVFLIPRALIHFQLNVGKGPATFIPIFNTQNPGVSDSLTTLFDTTPPIPNELLTKSLRVSDDVINGI 265
            VG V++N   N  F+KVL PG VF+ P  +IHFQ+N+GK PA      ++QN GV      +F +TPPI  ++L ++ ++  +V+  +
Sbjct:  128 VGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGSTPPINPDILAQAFQLDVNVVKDL 215
The following BLAST results are available for this feature:
BLAST of CX069942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
GL119_ARATH8.604e-1138.64Germin-like protein subfamily 1 member 19 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G10-M19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069942 ID=CX069942; Name=CX069942; organism=Citrus sinensis; type=EST; length=831bp
AAAGGTGCTTGTTGGGTTAGTAACAACTAATAATACCTTTTTCTCAAAGG
TTTTGACTCCCGGGATGGTGTTCTTAATTCCCAGAGCACTGATTCACTTC
CAGCTAAATGTTGGAAAGGGGCCGGCCACCTTTATACCTATTTTCAATAC
TCAAAATCCTGGCGTTTCGGACTCACTCACTACTCTTTTTGATACAACAC
CCCCAATTCCCAATGAATTGCTGACCAAATCTCTTCGAGTAAGTGATGAT
GTGATAAATGGCATCAGAAAAGCCCGGGCATCAAACTAGTAATCGGTCCA
GCTAGGTTAACATCCTGGGTGCTTGATCAATATGCTTTAGTGTGCCAACA
TATATATACTAATAAATGCGATTTATTTTATGTTACAATTATTGAATAAA
GAGTAAAGTCCAGACGACCAATAATTATTGAATAAGGAAAGCGAGATTTT
TTTTTTCTCATTTCTTCTTCTTTTACTTTTGATTTTTCCATGGCATTATC
TATGCAATTTGTTGCTTCCATCGGCCTCGTTCATTGGTATTTCCTTGTAG
GCTTCAAATAATCTTTTATAATCCGAATTTCATTCCTGTATTTCCAGCCT
CTCAATATCCATTAATGGTACCCCTGCAATAATTATTGAATAAAAAATGC
CTAATACTTATTAATTTTTTTGTCTTGTTAATTTTTTTTCATGGGTCATT
CTATTTGATATATACCGCGATAAAATAATTCGATAAATATGTCAAAAATA
AAATTACCGGTGAAATAGAAAACATACTGAAATCAAACCCGTTCATTGCT
TTATTATTTTTTTGTTCTCCCTATTCAACCG
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