CX069940

Overview
NameCX069940
Unique NameCX069940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLD5_ORYSI (Putative cellulose synthase-like protein D5 OS=Oryza sativa subsp. indica GN=CSLD5 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.761e-21
Identity = 77/276 (27.90%), Postives = 134/276 (48.55%), Query Frame = 2
Query:    8 YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGPSRMSLLLSMCYGEMSLFP------LLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQEVISTG-GSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRMI--AVGNWDKLFAQVLLSLYILIINFAIVEGMIVRKDK 808
            Y SV+ED  TG+ +H +GW S Y    R  F GT+  NL D L Q  RWA+G +++  S+   +L    R+  L  M Y  + ++P      ++YCL       LP L L +G  +   +   F   L  I ++ +   L EV  +G G    WRNEQ  W+I   ++H    +  ++K++   + SF  T K    +    +    +  + +S+F +P ++++ +N+ ALV GV R +   +  + KL      S ++L   +   +G++ R+ +
Sbjct:  711 YGSVTEDVVTGYRMHNRGWRSVYCITRRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSKNNAVL-ASRRLKFLQRMAYLNVGIYPFTSLFLIMYCL-------LPALSLFSGQFIVATLDPTFLSYLLLITITLMLLCLLEVKWSGIGLEEWWRNEQ-FWVIGGTSAHLAAVLQGLLKVVAGIEISFTLTAKAAAEDDDDPF-AELYLIKWTSLF-IPPLAVIGINIIALVVGVSRTVYAEIPQYSKLLGGGFFSFWVLAHYYPFAKGLMGRRGR 975          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.665e-19
Identity = 72/240 (30.00%), Postives = 111/240 (46.25%), Query Frame = 2
Query:    8 YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGPSRMSLLLSMC--YGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLD----NEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRMIAV 709
            Y S++ED  TG  +H  GW ST ++   P F+G +       L Q  RWASG +++ ISR  P+L    + SL    C  Y    ++P+     L C+A L   CLL+     P+ S   F +   +F++       E I  G S     N  R+  I S ++     +  I+K LG  +  F  T K       +      E G+F F  S+VF +P+ +L +L+V A+  G  R++ V
Sbjct:  453 YGSLTEDVLTGQRIHAAGWRSTLMEIEPPAFMGCAPNGGPACLTQLKRWASGFLEILISRNNPILTTTFK-SLQFRQCLAYLHSYVWPVRAPFEL-CYALLGPYCLLSNQSFLPKTSEDGFYIALALFIAYNTYMFMEFIECGQSARACWNNHRMQRITSASAWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVF-IPVTALAMLSVIAIAVGAWRVVLV 689          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.845e-19
Identity = 69/243 (28.40%), Postives = 110/243 (45.27%), Query Frame = 2
Query:    2 FSYQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGPSRMSLLLSMCYGEMSLFPLLYCLPL-----WCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLD----NEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRMI 703
            ++Y S++ED  TG  +H  GW S  L+   P FLG + T     L Q  RWA+GL ++ IS+  PLL     +S+   + + +   +  LY   +      C+  L   CLL       + S   F +   +FL+    +  E +  G SV  W N  R+  I S ++        ++K +GL +  F  T K       N Q    +  +F F  S VF +P+ +L +LN+ A+  G  R +
Sbjct:  493 WAYGSMTEDILTGQRIHAAGWRSAKLETEPPAFLGCAPTGGPACLTQFKRWATGLFEILISQNNPLL-----LSIFKHLQFRQCLAYLTLYVWAVRGFVELCYELLVPYCLLTNQSFLSKASENCFNITLALFLTYNTYNFVEYMECGLSVRAWWNNHRMQRIISASAWLLAFFTVLLKTIGLSETVFEVTRKEKSTSDGNGQNDEVDPERFTFDASPVF-IPVTALTMLNIVAITIGTWRAV 729          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.079e-18
Identity = 62/270 (22.96%), Postives = 130/270 (48.15%), Query Frame = 2
Query:    8 YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGPSRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRMIAVGNWD---KLFAQVLLSLYILIINFAIVEGMIVRKDK 808
            Y +V+ED  TG+ +H KGW S Y       F+GT+  NL + L Q  RW++G +++  SR  P L+G + +  L  + Y  ++ +P    L L  + T+P L  + G  +    ++ F++ L+ +  + +   + EV   G +V+ W    + WM  S +++    +  + K++  R  SF  T+K+   ++ K      +  + + + + P++ +++  + + V      +  G W    K+   V  + ++L   +   +G++ +  K
Sbjct:  630 YGTVTEDVVTGYRMHIKGWRSRYCSIYPHAFIGTAPINLTERLFQVLRWSTGSLEIFFSRNNP-LFGSTFLHPLQRVAYINITTYPFT-ALFLIFYTTVPALSFVTGHFIVQRPTTMFYVYLAIVLGTLLILAVLEVKWAGVTVFEWFRNGQFWMTASCSAYLAAVLQVVTKVVFRRDISFKLTSKLPAGDEKKDPYADLYVVRWTWLMITPIIIILVNIIGSAV--AFAKVLDGEWTHWLKVAGGVFFNFWVLFHLYPFAKGILGKHGK 895          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.841e-18
Identity = 68/236 (28.81%), Postives = 110/236 (46.61%), Query Frame = 2
Query:    8 YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGP-SRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVL----DNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRM 700
            Y S++ED  TG  +H  GW S  +    P F+G++       L Q  RWA+G  ++ ISR  P+L     R+     + Y  +  +PL     L C+  L   C+L      P+ S   F V   +F+S    +  E ++ G S   W N  R+  I SV++     +  ++K LGL +  F  T K      D++     + G+F F +  VF +P+ +L +LN+ A+  G  R+
Sbjct:  464 YGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFEL-CYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVF-IPVTALAMLNIVAVTVGACRV 697          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.841e-18
Identity = 68/236 (28.81%), Postives = 110/236 (46.61%), Query Frame = 2
Query:    8 YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGP-SRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVL----DNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRM 700
            Y S++ED  TG  +H  GW S  +    P F+G++       L Q  RWA+G  ++ ISR  P+L     R+     + Y  +  +PL     L C+  L   C+L      P+ S   F V   +F+S    +  E ++ G S   W N  R+  I SV++     +  ++K LGL +  F  T K      D++     + G+F F +  VF +P+ +L +LN+ A+  G  R+
Sbjct:  464 YGSLTEDILTGQRIHAMGWRSVLMVTEPPAFMGSAPIGGPACLTQFKRWATGQSEIIISRNNPILATMFKRLKFRQCLAYLIVLGWPLRAPFEL-CYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVF-IPVTALAMLNIVAVTVGACRV 697          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.472e-17
Identity = 75/288 (26.04%), Postives = 127/288 (44.10%), Query Frame = 2
Query:    8 YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGP-------SRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRMIAVGN------WDKLFA--------QVLLSLYILIINFAIVEGMIVRKDK 808
            Y +V+ED  TGF +H +GW S Y   +   F GT+  NL D L Q  RWA+G +++  SR   LL G         R + L +  Y   SLF + YCL    F  +P +    G    P  +   F+    + L+A+   + E   +G ++  W   ++ WM+ + +++        +K+   ++ SF  T+K L +       +   D Q + ++ V   +LM    AAL   V  M A G       WD   A         V  ++++++  +    G++ R+ K
Sbjct:  523 YGTVTEDVATGFCMHRRGWRSAYYAAAPDAFRGTAPINLADRLHQVLRWAAGSLEIFFSRNNALLAGGRRRLHPLQRAAYLNTTVYPFTSLFLMAYCL----FPAIPLIAGGGGWNAAPTPTYVAFLAALMVTLAAVA--VLETRWSGIALGEWWRNEQFWMVSATSAYLAAVAQVALKVATGKEISFKLTSKHLASSAT---PVAGKDRQYAELYAVRWTALMAPTAAALAVNVASMAAAGGGGRWWWWDAPSAAAAAAAALPVAFNVWVVVHLYPFALGLMGRRSK 801          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.552e-16
Identity = 75/278 (26.98%), Postives = 129/278 (46.40%), Query Frame = 2
Query:    8 YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGPSRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPF-----FMVLSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMK-LLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRMIAVGNWDK-----LFAQVLLSLYILIINFAIVEGMIVRKDK 808
            Y   +ED  TGF LH KGW S Y       F GT+  NL + L Q  RW+ G +++  SR CPLL G  R+  +  + Y  M+ +P +  L +  +  LP + L +    +  +  PF     ++V     +  I   L E+   G ++  W   ++ +MI +   +    +  ++K LLGL+   F  T K L     +R+    +D   S + L P V +M +NV A+     + + VG W         A ++ ++++L++ +    G++ R  K
Sbjct:  559 YDIATEDVVTGFRLHRKGWRSMYCAMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSRNCPLLAG-CRLRPMQRVAYANMTAYP-VSALFMVVYDLLPVIWLSHHGEFH--IQKPFSTYVAYLVAVIAMIEVI--GLVEIKWAGLTLLDWWRNEQFYMIGATGVYLAAVLHIVLKRLLGLKGVRFKLTAKQLAGGARERF-AELYDVHWSPL-LAPTVVVMAVNVTAIGAAAGKAV-VGGWTPAQVAGASAGLVFNVWVLVLLYPFALGIMGRWSK 827          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CSLF8_ORYSJ (Probable mixed-linked glucan synthase 8 OS=Oryza sativa subsp. japonica GN=CSFL8 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.543e-15
Identity = 61/272 (22.43%), Postives = 126/272 (46.32%), Query Frame = 2
Query:    8 YQSVSEDFFTGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGPSRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQEVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMKLLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILNVAALVCGVIRMIAVGNWDKL-----FAQVLLSLYILIINFAIVEGMIVRKDK 808
            Y   +ED  TGF LH  GW S Y       F GT+  NL + L Q  RW+ G +++  S  CPLL G  R++ +  + Y  M+ +P+     L+ +   P + +  GI    +    + + L  +   +    + E+   G ++  W   ++ ++I +   +    +  ++K  GL+  SF  T K + +   +++    +D Q + + L P + ++ +N+ A+   + + +  G W  +        ++ +++IL++ +    G++ R  K
Sbjct:  571 YNIATEDVVTGFRLHRTGWRSMYCRMEPDAFRGTAPINLTERLYQILRWSGGSLEMFFSHNCPLLAG-RRLNFMQRIAYINMTGYPVTSVFLLF-YLLFPVIWIFRGIFYIQKPFPTYVLYLVIVIFMSEMIGMVEIKWAGLTLLDWIRNEQFYIIGATAVYPLAVLHIVLKCFGLKGVSFKLTAKQVASSTSEKF-AELYDVQWAPL-LFPTIVVIAVNICAIGAAIGKAL-FGGWSLMQMGDASLGLVFNVWILLLIYPFALGIMGRWSK 837          
BLAST of CX069940 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 62/270 (22.96%), Postives = 122/270 (45.19%), Query Frame = 2
Query:   35 TGFILHCKGWTSTYLDPSRPQFLGTSTTNLNDVLIQGTRWASGLIDVSISRFCPLLYGPSRMSLLLSMCYGEMSLFPLLYCLPLWCFATLPQLCLLNGIPLYPEVSSPFFMVLSFIFLSAICKHLQ-EVISTGGSVYTWRNEQRIWMIKSVTSHFYGSMDAIMK-LLGLRKASFLPTNKVLDNEQVKRYEMGQFDFQTSSVFLVPMVSLMILN---VAALVCGVIRMIAVG-------NWDKLFAQVLLSLYILIINFAIVEGMIVRKDK 808
            TGF +H +GW+S Y  P+RP F   +  +  DVL   +R A   + + +SR    ++   R+ LL  + Y   + +PL   LPL  +  LP +CLL G   +P   S +  VL  + L ++   +  E+  +   +  W  ++++WM+ + ++        I+    G+  A    T            + G+ +   +S   +   +L++     V A + GV+  +A G       +W  L A++ L+ +++      + G++  +D+
Sbjct:  551 TGFRMHARGWSSAYCSPARPAFRRYARASPADVLAGASRRAVAAMGILLSRRHSPVWAGRRLGLLQRLGYVARASYPLA-SLPLTVYCALPAVCLLTGKSTFPSDVSYYDGVLLILLLFSVAASVALELRWSRVPLRAWWRDEKLWMVTATSASLAAVFQGILSACTGIDVAFSTETAASPPKRPAAGNDDGEEEAALASEITMRWTNLLVAPTSVVVANLAGVVAAVAYGVDHGYYQSWGALGAKLALAGWVVAHLQGFLRGLLAPRDR 819          
The following BLAST results are available for this feature:
BLAST of CX069940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CSLD5_ORYSI6.761e-2127.90Putative cellulose synthase-like protein D5 OS=Ory... [more]
CSLH1_ORYSJ1.665e-1930.00Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLH3_ORYSJ4.845e-1928.40Putative cellulose synthase-like protein H3 OS=Ory... [more]
CSLF6_ORYSJ1.079e-1822.96Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLH2_ORYSJ1.841e-1828.81Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI1.841e-1828.81Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLF7_ORYSJ3.472e-1726.04Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CSLF9_ORYSJ8.552e-1626.98Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLF8_ORYSJ5.543e-1522.43Probable mixed-linked glucan synthase 8 OS=Oryza s... [more]
CESAB_ORYSJ3.593e-1422.96Putative cellulose synthase A catalytic subunit 11... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G09-M17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069940 ID=CX069940; Name=CX069940; organism=Citrus sinensis; type=EST; length=811bp
CTTTTCGTATCAATCTGTTTCGGAAGATTTCTTTACAGGATTCATCTTAC
ATTGCAAAGGCTGGACCTCGACATATCTTGACCCATCCAGGCCACAGTTT
CTGGGTACTTCGACCACAAATTTGAATGATGTATTGATTCAAGGCACCAG
ATGGGCCTCTGGGTTGATTGACGTCAGTATCTCGAGATTCTGCCCTCTAC
TTTACGGACCGTCAAGGATGTCTTTACTTCTGAGCATGTGCTATGGAGAG
ATGTCGTTGTTCCCTCTTCTTTATTGCTTGCCTCTCTGGTGTTTTGCTAC
TCTTCCTCAGTTGTGTCTGCTAAACGGCATCCCTCTGTACCCTGAGGTTT
CAAGTCCTTTCTTTATGGTACTTTCATTCATTTTCTTATCGGCGATTTGT
AAACACTTGCAAGAGGTCATTTCAACTGGAGGTTCAGTCTATACATGGAG
AAATGAGCAGAGAATTTGGATGATAAAGTCTGTCACATCTCATTTCTATG
GAAGTATGGATGCTATTATGAAACTTCTTGGCTTGAGGAAAGCCAGTTTC
TTGCCAACCAACAAGGTTTTAGATAATGAACAAGTCAAAAGATATGAAAT
GGGCCAATTTGATTTTCAAACATCCTCTGTGTTTCTTGTTCCTATGGTTT
CTTTGATGATTTTGAACGTGGCAGCCTTGGTTTGCGGAGTTATCAGAATG
ATTGCTGTGGGCAACTGGGACAAGTTGTTTGCGCAAGTGTTGCTCTCACT
CTACATCTTGATCATCAATTTTGCAATTGTTGAAGGGATGATAGTGAGAA
AGGACAAGGGA
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