CX069928

Overview
NameCX069928
Unique NameCX069928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.255e-48
Identity = 92/201 (45.77%), Postives = 139/201 (69.15%), Query Frame = 1
Query:   49 PGPISSWTGSILREPPQHLIAVMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPA 648
            PGP +   G    +P +  +      YD  FK++L+GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + V+ DG  VKLQIWDTAGQERFR++T +YYR AH ++++YDVT++ SF++++ WL EI  +A ++V  +L+GNK D   ++ V  E A+  A + G+PFMETSAK  +NV+ AF A+  ++K R    P+
Sbjct:   36 PGPEAPPNGP--PQPGRSSVGGGGDFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQRHTKAPS 234          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 86/166 (51.81%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMT 612
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  V++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D   K+ V  E  +  A E G+ F ETSA  ++N++++F  +T
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLT 166          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.560e-48
Identity = 86/166 (51.81%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMT 612
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  V++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D   K+ V  E  +  A E G+ F ETSA  ++N++++F  +T
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLT 166          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.568e-48
Identity = 86/166 (51.81%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMT 612
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T+E DG  V++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D   K+ V  E  +  A E G+ F ETSA  ++N++++F  +T
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLT 166          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.461e-47
Identity = 85/166 (51.20%), Postives = 123/166 (74.10%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMT 612
            M  +YD LF+LLLIGDSGVGK+CLL RF D+ +  S+ISTIGVDFK++T++ DG  V++QIWDTAGQER++TIT  YYR A GI +VYD++ + S+ ++ +W++++D YA E V K+L+GNK D   K+ V  E  +  A E G+ F ETSA  ++N++++F  +T
Sbjct:    1 MAKQYDVLFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLT 166          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.493e-47
Identity = 89/195 (45.64%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPV 696
            ++  +DYLFK++LIGDS VGK+C++  F    Y+++  +TIGVDF +R +E DGK VK+Q+WDTAGQERFRTIT SYYR AH  II YD+T + +F +V  W++EI++Y + N+  +L+GNKCDL +K+ V +E A   A++ G +  +ETSAK+S N+++ F+ M  ++  R  S P      P ++ ++  PV
Sbjct:   10 VDENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMAR-HSLPLYGEGAPGSLPLESTPV 203          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 91/183 (49.73%), Postives = 132/183 (72.13%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-----KNRMASQPAMNN 657
            EYDYLFK++LIGDSGVGKS +L RF  + +     STIGV+F  RT++ +GKTVK QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV++WL E+  +A  N+  ++ GNK DL   + VS E  +A A++ G+ F+ETSA +++N+E+AF  +  +I     K  +A+Q A +N
Sbjct:    8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSN 190          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = 1
Query:  127 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 633
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+ ++ VSYE  + FA E G+ FME SAK + NVE+AF+     I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRR 185          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRR 185          
The following BLAST results are available for this feature:
BLAST of CX069928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB26_BOVIN2.255e-4845.77Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB15_RAT6.560e-4851.81Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN6.560e-4851.81Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN8.568e-4851.81Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAB15_MOUSE1.461e-4751.20Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB19_BOVIN2.493e-4745.64Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RB2BV_BETVU1.616e-4649.73Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAB2A_MAIZE2.110e-4652.07Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RB11A_RAT2.756e-4652.22Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT2.756e-4652.22Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069928 ID=CX069928; Name=CX069928; organism=Citrus sinensis; type=EST; length=696bp
GTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACTCC
CGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCAAC
ATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTTTG
CTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTTGC
TGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTTTA
AAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTTGG
GACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTACCG
TGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAGCT
TCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTGAA
AATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAGAA
GGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCATCC
CGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTTTT
ATGGCTATGACTGCTGACATTAAGAACAGGATGGCAAGTCAACCTGCAAT
GAACAATGCAAGGCCACCAACTGTGCAGATAAAAGGACAACCGGTG
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