CX069928

Overview
NameCX069928
Unique NameCX069928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRR 185          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRR 185          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRR 185          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRR 185          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRR 185          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  R+++ DGKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+    ++ NV++WL E+  +A  N+  +LVGNK DL   + V  + A+AFA++ G+ F+ETSA DS NVE AF  +  +I  R+ SQ  M++ R
Sbjct:    7 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI-YRIVSQKQMSDRR 185          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.756e-46
Identity = 88/169 (52.07%), Postives = 121/169 (71.60%), Query Frame = 1
Query:  127 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 633
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  D K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +LVGNKCDL+ ++ VSYE  + FA E G+ FME SAK + NVE+AF+     I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKI 171          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: YPT3_SCHPO (GTP-binding protein ypt3 OS=Schizosaccharomyces pombe GN=ypt3 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.600e-46
Identity = 93/166 (56.02%), Postives = 118/166 (71.08%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 621
            EYDYLFK +LIGDSGVGKS LL+RF  + +     STIGV+F  R +  D K +K QIWDTAGQER+R ITS+YYRGA G +IVYD+T Q SF+NV +WL E+  +A  N+  +LVGNK DL   + VS E A+AFA E  + F+ETSA D+ NVE+AF  +  +I
Sbjct:    6 EYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEI 171          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 86/169 (50.89%), Postives = 123/169 (72.78%), Query Frame = 1
Query:  127 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 633
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT ++ V+ E  + FA E G+ F+ETSA+ + NVE+AF+    +I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.140e-46
Identity = 86/169 (50.89%), Postives = 123/169 (72.78%), Query Frame = 1
Query:  127 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 633
            Y YLFK ++IGD+GVGKSCLLL+F D  +   +  TIGV+F  R +  DGK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  WL +  ++A+ N+  +L+GNKCDLT ++ V+ E  + FA E G+ F+ETSA+ + NVE+AF+    +I  ++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171          
The following BLAST results are available for this feature:
BLAST of CX069928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_PONAB2.756e-4652.22Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG2.756e-4652.22Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE2.756e-4652.22Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN2.756e-4652.22Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK2.756e-4652.22Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA2.756e-4652.22Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RAB2B_MAIZE2.756e-4652.07Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]
YPT3_SCHPO3.600e-4656.02GTP-binding protein ypt3 OS=Schizosaccharomyces po... [more]
YPTV4_VOLCA6.140e-4650.89GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE6.140e-4650.89GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069928 ID=CX069928; Name=CX069928; organism=Citrus sinensis; type=EST; length=696bp
GTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACTCC
CGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCAAC
ATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTTTG
CTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTTGC
TGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTTTA
AAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTTGG
GACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTACCG
TGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAGCT
TCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTGAA
AATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAGAA
GGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCATCC
CGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTTTT
ATGGCTATGACTGCTGACATTAAGAACAGGATGGCAAGTCAACCTGCAAT
GAACAATGCAAGGCCACCAACTGTGCAGATAAAAGGACAACCGGTG
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