CX069928

Overview
NameCX069928
Unique NameCX069928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.547e-81
Identity = 152/194 (78.35%), Postives = 165/194 (85.05%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPV 696
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQER RTITSSYYRGAHGII+VYDVTDQES+ NVKQWL EIDRYASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK RM    A    R P ++I   PV
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGER-PNLKIDSTPV 193          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 7.678e-81
Identity = 147/182 (80.77%), Postives = 162/182 (89.01%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNA 660
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWL+EIDRYA ENVNKLLVGNK DLT K+VVS + AK FA+ +GI F+ETSAK++ NVE+AFM M A IK RMA+ P    A
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLHEIDRYACENVNKLLVGNKSDLTAKRVVSTDAAKEFAESLGIEFLETSAKNAANVEKAFMMMAAQIKKRMANAPVAPKA 182          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 296.59 bits (758), Expect = 8.489e-80
Identity = 147/184 (79.89%), Postives = 160/184 (86.96%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQP-AMNNAR 663
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT E +GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQ+SFNNVKQWL EIDRYA E VN+LLVGNK D+ DKKVV Y  AK FAD + IPF+ETSAKDS NVEQAF+ M+  IK RM +   A +NA+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAK 184          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 9.385e-79
Identity = 143/195 (73.33%), Postives = 169/195 (86.67%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-KNRMASQPAMNNARPPTVQIKGQPV 696
            M+ E+DYLFKLLLIGDS VGKSC LLRFADDSY+DSYISTIGVDFKIRTVE +GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYD+TD ESFNNVKQWL+EIDRYA+++V KLLVGNKCDL + + V    A+A+A E+GIPF+ETSAK+S+NVE+AF+AM+A I K++  SQ A+       VQ+KG+P+
Sbjct:    1 MSNEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPI 195          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 288.5 bits (737), Expect = 2.312e-77
Identity = 145/194 (74.74%), Postives = 161/194 (82.99%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPV 696
            MNP YD LFKLLLIGDSGVGKSCLLLRFADD Y +SYISTIGVDFKI+T+E DGKT+KLQIWDTAGQERF TITSSYYRGAHG ++VYDVTDQES+ NVKQWL EIDR+ASENVNKLLVGNK DLT KKVV   TAK FAD +GIPF+ETSAK++ NVEQAFM M A+IK +M    A    R P ++I   PV
Sbjct:    1 MNPGYDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGER-PNLKIDSTPV 193          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 3.943e-77
Identity = 143/195 (73.33%), Postives = 162/195 (83.08%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM-ASQPAMNNARPPTVQIKGQPV 696
            MNP+Y YLFKLLLIGDSGVGKSCLLLRFADD+Y +S+ISTIGVDFKIRT+E +GKT+KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD+ +F NV+QWL EIDR+A ENVNKLLVGNK DL  KKVV + TAKAFAD + IPF+ETSAK S NVEQAFM M  +IKNR+ ASQP     +   V     P+
Sbjct:    1 MNPDYHYLFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRLTASQPTQTVDKNKVVPGSSAPI 195          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.657e-75
Identity = 135/182 (74.18%), Postives = 153/182 (84.07%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNA 660
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+  DGK +KLQIWDTAGQERFRTITSSYYRGAHGII+VYDVTD  SFNNVKQW+ EI RYA ++V +LLVGNKCDL +KK+V   TA+ +AD +GIPF+ETSAK S NVEQAFM M ++IK         NN+
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQPNNNS 182          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 276.944 bits (707), Expect = 6.960e-74
Identity = 140/196 (71.43%), Postives = 155/196 (79.08%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP----TVQIKGQ 690
            MN EYDYLFKLLLIG+SGVGKSCLLLRF+DD+Y + YISTIGVDFKI+TVE DGKTVKLQIWDTAGQERFRTITSSYYRG+HGIIIVYDVTDQESFN VK WL EIDRYA+  V KLLVGNKCDL DK+VV Y+ AK FAD   +PF+ETSA DS NVE AF+ M   IK  M+ Q      +       V +KGQ
Sbjct:    1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGNVNLKGQ 196          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.714e-72
Identity = 133/192 (69.27%), Postives = 158/192 (82.29%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQ 690
            M PE+D+ FK+LLIGDSGVGKSCLLLRFADDS+ D++ISTIGVDFKI+T+  DGKT+KLQIWDTAGQERFRTITSSYYRGA GII+VYD TDQ+SF NVKQW+ EIDRYA ENVNKLLVGNK DL ++KVV    AK+FA+  GIPF+ETSAK++ NVE+ F++M  DIKNR+A        +P  V IK +
Sbjct:    3 MAPEHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLAD--IQETPKPDEVDIKSK 192          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 3.132e-66
Identity = 116/184 (63.04%), Postives = 153/184 (83.15%), Query Frame = 1
Query:  127 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ 678
            YDYL KLLLIGDSGVGKSCLLLRF++DS+  S+I+TIG+DFKIRT+E +GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD++SF N++ W+  I+++A+++VNK+L+GNKCD+ +KKVV     K+ ADE GI F+ETSAK+S+NVE+AF+++  DIK RM   P   N +P  VQ
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDIKKRMIDTP---NEQPQVVQ 192          
The following BLAST results are available for this feature:
BLAST of CX069928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_PIG1.547e-8178.35Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_PHYIN7.678e-8180.77Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]
YPT1_SCHPO8.489e-8079.89GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
YPTM1_MAIZE9.385e-7973.33GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1C_HUMAN2.312e-7774.74Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1A_DICDI3.943e-7773.33Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1B_DICDI1.657e-7574.18Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
YPT1_YEAST6.960e-7471.43GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1D_DICDI1.714e-7269.27Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB8A_DICDI3.132e-6663.04Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069928 ID=CX069928; Name=CX069928; organism=Citrus sinensis; type=EST; length=696bp
GTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACTCC
CGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCAAC
ATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTTTG
CTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTTGC
TGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTTTA
AAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTTGG
GACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTACCG
TGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAGCT
TCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTGAA
AATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAGAA
GGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCATCC
CGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTTTT
ATGGCTATGACTGCTGACATTAAGAACAGGATGGCAAGTCAACCTGCAAT
GAACAATGCAAGGCCACCAACTGTGCAGATAAAAGGACAACCGGTG
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