CX069928

Overview
NameCX069928
Unique NameCX069928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RANL_DROME (GTP-binding nuclear protein Ran-like OS=Drosophila melanogaster GN=ran-like PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.069e-21
Identity = 56/185 (30.27%), Postives = 99/185 (53.51%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQ 678
            E   +FKL+LIGD G GK+ L+ R     +   Y +T+GV+ +      +    ++ +WDTAGQER+  +   Y+  +   II++DV    ++NNVK+W  ++ R    N+  ++ GNK D+  KK  +++    F  +  I  +E SAK + NVE+ F+ +      ++   P++   + P +Q
Sbjct:    6 EVKAIFKLILIGDGGTGKTTLVKRHLTGEFKMQYNATLGVEVEQLLFNTNRGVFRIDVWDTAGQERYGGLRDGYFVQSQCAIIMFDVASSNTYNNVKRWHRDLVRVCG-NIPIVICGNKVDIMHKK--TWKKGVDFDRKTNIYLIEMSAKSNYNVEKPFVYLL----RKLVGDPSLQLVQSPAIQ 183          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RBL2A_HUMAN (Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  142 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 600
            K++ +GDS VGKS L+ RF  D +    +ST  +     T   DGKT+ +  WDTAGQERF+++ +SYY  AH  I+V+D+  + ++ N+  W  E+  +  E +  ++V NK D  +    S+  AK F+    +P    SA D  NV + F
Sbjct:   23 KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELREFRPE-IPCIVVANKIDDINVTQKSFNFAKKFS----LPLYFVSAADGTNVVKLF 170          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RASZ_DICDI (Ras-like protein rasZ OS=Dictyostelium discoideum GN=rasZ PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 55/169 (32.54%), Postives = 94/169 (55.62%), Query Frame = 1
Query:  136 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMAS 639
            L +L ++GD GVGK+ + ++F  + ++  Y  TI   ++ + V  D +   L I DTAGQ+    +   + R   G ++VY +T + SF+ V+ +  +I R    ++V  +++GNK DL D++ V+Y+  K  A  +G+ FME SAK   N+E+ F      +K R  S
Sbjct:    9 LVRLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCVIDD-QVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSITSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTYQEGKDLARCLGMSFMEVSAKSRANIEEVFNETVRSVKRREES 176          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 64/185 (34.59%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  139 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD-SMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKG 687
            +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    E+   +LV NK DL   + V+ +  K  A +  IP++ETSAKD  +NV++ F  +   I+ ++   P  N  +    + +G
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQV---PEKNQKKKKKTKWRG 194          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.008e-21
Identity = 64/185 (34.59%), Postives = 100/185 (54.05%), Query Frame = 1
Query:  139 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKD-SMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKG 687
            +KL+++GD GVGKS L ++F    ++  Y  TI  D  ++  E D +   L + DTAGQE F  +   Y R   G +IVY VTD+ SF +V ++   I R    E+   +LV NK DL   + V+ +  K  A +  IP++ETSAKD  +NV++ F  +   I+ ++   P  N  +    + +G
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQV---PEKNQKKKKKTKWRG 194          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAPC_DICDI (Ras-related protein rapC OS=Dictyostelium discoideum GN=rapC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 53/179 (29.61%), Postives = 100/179 (55.87%), Query Frame = 1
Query:  139 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQES---FNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGI-PFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 663
            +K++++G SG GK+ L +RF +  ++++Y  TI   ++       G+ + L+I DT+G ER+  +   Y R A   ++VY +T + S     N+K ++ ++       +  +++GNKCDL D +VV  E  +A   + GI  F+ETSAK  MN++ A+  +T  + ++ +     +N +
Sbjct:    4 YKVVVLGASGTGKTSLTVRFVNGDFVETYDPTIEDLYRKVIETNKGEHIMLEIMDTSGTERYLAMRDLYIRNAQAFVLVYSITSRVSLLELENIKNYICQVKDRPISQIPMVVLGNKCDLEDTRVVFPEEVEALTKKWGIEDFLETSAKIDMNIQSAYDCLTLQLMSKQSFLNGSSNGK 182          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 60/188 (31.91%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  139 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKN----RMASQPAMNNARPPTVQIKGQ 690
            FKL+L+GD G GK+  + R     +   YI+TIGV+    +   +   +K  +WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   EN+  +L GNK D+ ++KV +      F  +  + + + SAK + N E+ F+ +   +         + PA+    PP VQ+  Q
Sbjct:   14 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL---APPEVQVDEQ 195          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.234e-21
Identity = 60/188 (31.91%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  139 FKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKN----RMASQPAMNNARPPTVQIKGQ 690
            FKL+L+GD G GK+  + R     +   YI+TIGV+    +   +   +K  +WDTAGQE+F  +   YY  A   II++DVT + ++ NV  W  ++ R   EN+  +L GNK D+ ++KV +      F  +  + + + SAK + N E+ F+ +   +         + PA+    PP VQ+  Q
Sbjct:   13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERKVKA--KTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL---APPEVQVDEQ 194          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RBL2B_HUMAN (Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  142 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 600
            K++ +GDS VGKS L+ RF  D +    +ST  +     T   DG+T+ +  WDTAGQERF+++ +SYY  AH  I+V+DV  + ++ N+  W  E+  +  E +  ++V NK D  +    S+  AK F+    +P    SA D  NV + F
Sbjct:   23 KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGRTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYRNLSTWYTELREFRPE-IPCIVVANKIDDINVTQKSFNFAKKFS----LPLYFVSAADGTNVVKLF 170          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RBL2A_PONAB (Rab-like protein 2A OS=Pongo abelii GN=RABL2A PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.836e-21
Identity = 57/153 (37.25%), Postives = 85/153 (55.56%), Query Frame = 1
Query:  142 KLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 600
            K++ +GDS VGKS L+ RF  D +    +ST  +     T   DGKT+ +  WDTAGQERF+++ +SYY  AH  I+V+DV  + ++ N+  W  E+  +  E +  L+V NK D  D  V   + +  FA +  +P    SA D  NV + F
Sbjct:   23 KIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDVQRKVTYKNLSAWYTELREFRPE-IPCLVVANKID-ADINVT--QKSFNFAKKFSLPLYFVSAADGTNVVKLF 171          
The following BLAST results are available for this feature:
BLAST of CX069928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RANL_DROME3.069e-2130.27GTP-binding nuclear protein Ran-like OS=Drosophila... [more]
RBL2A_HUMAN4.008e-2135.95Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2... [more]
RASZ_DICDI4.008e-2132.54Ras-like protein rasZ OS=Dictyostelium discoideum ... [more]
RASM_RAT4.008e-2134.59Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]
RASM_MOUSE4.008e-2134.59Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RAPC_DICDI5.234e-2129.61Ras-related protein rapC OS=Dictyostelium discoide... [more]
GSP2_YEAST5.234e-2131.91GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
GSP1_YEAST5.234e-2131.91GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
RBL2B_HUMAN6.836e-2135.95Rab-like protein 2B OS=Homo sapiens GN=RABL2B PE=2... [more]
RBL2A_PONAB6.836e-2137.25Rab-like protein 2A OS=Pongo abelii GN=RABL2A PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069928 ID=CX069928; Name=CX069928; organism=Citrus sinensis; type=EST; length=696bp
GTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACTCC
CGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCAAC
ATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTTTG
CTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTTGC
TGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTTTA
AAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTTGG
GACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTACCG
TGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAGCT
TCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTGAA
AATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAGAA
GGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCATCC
CGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTTTT
ATGGCTATGACTGCTGACATTAAGAACAGGATGGCAAGTCAACCTGCAAT
GAACAATGCAAGGCCACCAACTGTGCAGATAAAAGGACAACCGGTG
back to top