CX069928

Overview
NameCX069928
Unique NameCX069928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2148 contig Csv1_Contig2148:37..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.260e-59
Identity = 107/190 (56.32%), Postives = 146/190 (76.84%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 684
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++ ++YISTIG+DFKIRTVE +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI  +   + + N+++P +  +K
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRSGNHSKPSSTDLK 190          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.409e-58
Identity = 106/193 (54.92%), Postives = 144/193 (74.61%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQP 693
            M   YDYLFKLLLIGDSGVGK+C L RF++D++  ++ISTIG+DFKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF N++ W+  I+ +AS +V K+++GNKCD  DK+ VS E  +  A   GI FMETSAK ++N+E AF  +  DIK +M  +   N+ +     +K  P
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITP 193          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.100e-58
Identity = 106/193 (54.92%), Postives = 147/193 (76.17%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQP 693
            M   YDYLFKLLLIGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNK D+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P
Sbjct:    1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITP 193          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 6.993e-58
Identity = 105/190 (55.26%), Postives = 145/190 (76.32%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 684
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++  +YISTIG+DFKIRTVE +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A+  A E  I F ETSAK S+NV++AF ++  DI  +   + + N+++P +  +K
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGNSSKPSSTDLK 190          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.193e-57
Identity = 102/170 (60.00%), Postives = 136/170 (80.00%), Query Frame = 1
Query:  127 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA 636
            YD L KLLLIGDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT++   + VKLQ+WDTAGQERFRTIT++YYRGA GI++VYDVTD++SFNN++ W   +  YA+E V  +LVGNKCDL +K+VVS E  +A AD+ GIPF+E S+K ++NVE+ F ++   I++ +A
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVA 177          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.470e-57
Identity = 104/190 (54.74%), Postives = 144/190 (75.79%), Query Frame = 1
Query:  115 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 684
            M   YD+LFKLLLIGDSGVGK+CL++RFA+D++  +YISTIG+DFKIRTV+ +GK +KLQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A+  A E  I F ETSAK S+NV++AF ++  DI  +   + +  N++P +  +K
Sbjct:    1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLK 190          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.010e-56
Identity = 109/187 (58.29%), Postives = 146/187 (78.07%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQI 681
            EYDYLFK+++IGDSG GKS LLLRFAD++Y +SY+STIGVDFKI+TV+ D  T+KLQIWDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+GNK DL + +VVS + AK  A++  + ++E SAK   NVE+AF  +   +K+++   P  +NA   TV +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP--SNAPASTVSL 187          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.722e-56
Identity = 109/187 (58.29%), Postives = 145/187 (77.54%), Query Frame = 1
Query:  124 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ-WLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQI 681
            EYDYLFK+++IGDSG GKS LLLRFAD++Y +SY+STIGVDFKI+TV+ D  T+KLQIWDTAGQERFRTITS+YYRGAHGII VYDVT++ SF+++ + WL +ID+YA+ NV KLL+GNK DL D +VV  + AK  A++  + ++E SAK   NVE+AF  +   +K+++   P  +NA   TV +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYP--SNAPTSTVNL 187          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.116e-55
Identity = 100/165 (60.61%), Postives = 133/165 (80.61%), Query Frame = 1
Query:  127 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 621
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK +KLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSAK ++N+E+AF+ +  DI
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CX069928 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.116e-55
Identity = 100/165 (60.61%), Postives = 133/165 (80.61%), Query Frame = 1
Query:  127 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI 621
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK +KLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+ DK+VV     +  A E GI F ETSAK ++N+E+AF+ +  DI
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170          
The following BLAST results are available for this feature:
BLAST of CX069928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_MESAU8.260e-5956.32Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB8A_CHICK1.409e-5854.92Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB8A_PONAB4.100e-5854.92Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB13_RAT6.993e-5855.26Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RYL1_YARLI1.193e-5760.00Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB13_MOUSE3.470e-5754.74Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB1_THEPA1.010e-5658.29Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB1_THEAN1.722e-5658.29Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB10_PONAB1.116e-5560.61Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.116e-5560.61Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069928 ID=CX069928; Name=CX069928; organism=Citrus sinensis; type=EST; length=696bp
GTCAAATTCTCTCTCAATCTCACCTCCTTAGCTTGTCTGTGCCAAACTCC
CGGTCCAATCTCCAGCTGGACCGGTTCGATTCTGCGCGAACCCCCTCAAC
ATCTTATTGCAGTCATGAATCCTGAATATGACTACTTGTTCAAGCTTTTG
CTGATTGGAGACTCTGGAGTTGGCAAATCGTGTCTTCTTCTGAGATTTGC
TGATGATTCGTACCTGGACAGTTACATTAGCACTATTGGGGTTGACTTTA
AAATTCGCACAGTGGAGCAAGACGGGAAGACTGTAAAACTCCAAATTTGG
GACACTGCAGGGCAAGAACGATTCAGGACAATCACTAGCAGCTACTACCG
TGGAGCACATGGCATTATCATTGTTTATGATGTTACAGACCAAGAGAGCT
TCAACAACGTTAAGCAGTGGTTGAATGAAATTGATCGCTATGCAAGTGAA
AATGTAAACAAGCTTCTGGTTGGAAACAAGTGTGATCTCACTGATAAGAA
GGTTGTCTCTTATGAAACAGCGAAGGCATTTGCTGATGAAATTGGCATCC
CGTTCATGGAGACCAGCGCAAAGGATTCTATGAACGTGGAACAAGCTTTT
ATGGCTATGACTGCTGACATTAAGAACAGGATGGCAAGTCAACCTGCAAT
GAACAATGCAAGGCCACCAACTGTGCAGATAAAAGGACAACCGGTG
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