CX069927

Overview
NameCX069927
Unique NameCX069927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.207e-54
Identity = 99/188 (52.66%), Postives = 137/188 (72.87%), Query Frame = -2
Query:  281 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCC 844
            IGDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT++   + V+LQ+WDTAGQERFRTIT++YYRGA GI++VYDVTD++SFNN++ W   +  YA+E V  +LVGNKCDL +K+VVS E  +A AD+ GIPF+E S+K ++NVE+ F ++   I++ +A     N +    + I     N  + CC
Sbjct:   17 IGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKG-NESGSGGINIAEGEENSASKCC 203          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.765e-54
Identity = 102/203 (50.25%), Postives = 142/203 (69.95%), Query Frame = -2
Query:  236 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 844
            IGDSGVGK+C L RF++D++  ++ISTIG+DFKIRT+E DGK ++LQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF N++ W+  I+ +AS +V K+++GNKCD  DK+ VS E  +  A   GI FMETSAK ++N+E AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   14 IGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKKS---------SFFRCVLL 207          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.765e-54
Identity = 97/177 (54.80%), Postives = 135/177 (76.27%), Query Frame = -2
Query:  314 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 844
            IGDSGVGK+CL++RFA+D++ ++YISTIG+DF+IRTV+ +GK ++LQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI  +   +   NN +PP+  +K
Sbjct:   14 IGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRLKNNNKPPSTDLK 190          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.387e-54
Identity = 97/177 (54.80%), Postives = 135/177 (76.27%), Query Frame = -2
Query:  314 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIK 844
            IGDSGVGK+CL++RFA+D++ ++YISTIG+DFKIRTV+ +GK ++LQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI  +   + + N  +PP+  +K
Sbjct:   14 IGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTDLK 190          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 95/180 (52.78%), Postives = 139/180 (77.22%), Query Frame = -2
Query:  305 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQP 844
            IGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRTVE DGK ++LQIWDTAGQERFRTIT++YYRGA GI+ VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+ +K+ VS E  +  A + GI F+ETSAK S+NVE+AF+ +  DI  ++  +   N+ +    ++K  P
Sbjct:   14 IGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEAVDKLKSPP 193          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.095e-53
Identity = 102/203 (50.25%), Postives = 145/203 (71.43%), Query Frame = -2
Query:  236 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASCCST*SFVLSFIACICL 844
            IGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK ++LQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNK D+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +     +K  P  QK S         SF  C+ L
Sbjct:   14 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKITPDQQKRS---------SFFRCVLL 207          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.868e-53
Identity = 98/187 (52.41%), Postives = 137/187 (73.26%), Query Frame = -2
Query:  284 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKASC 844
            IGDSGVGK+CL++RFA+D++ ++YISTIG+DFKIRTVE +GK ++LQ+WDTAGQERF+TIT++YYRGA GII+VYD+TD++SF N++ W+  I   AS  V +LL+GNKCD+  K+ V  E A   A E GI F ETSAK SMNV++AF ++  DI  +   + + N+++P +  +K         C
Sbjct:   14 IGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDILLKSGGRRSGNHSKPSSTDLKPSDKKNTNKC 200          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 2.440e-53
Identity = 92/160 (57.50%), Postives = 130/160 (81.25%), Query Frame = -2
Query:  365 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 844
            IGDSGVGK+CLL RF++D++  ++ISTIG+DFKIRT+E DGK ++LQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N+K W+  I+ +AS +V ++++GNKCD+ DK+ VS E  +  A + GI F+E SAK SMNVE+AF  +  DI  ++
Sbjct:   14 IGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKL 173          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.440e-53
Identity = 97/184 (52.72%), Postives = 140/184 (76.09%), Query Frame = -2
Query:  293 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQK 844
            IGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK ++LQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +  +  +K     QK
Sbjct:   14 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQK 197          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.440e-53
Identity = 97/184 (52.72%), Postives = 140/184 (76.09%), Query Frame = -2
Query:  293 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQK 844
            IGDSGVGK+C+L RF++D++  ++ISTIG+DFKIRT+E DGK ++LQIWDTAGQERFRTIT++YYRGA GI++VYD+T+++SF+N++ W+  I+ +AS +V K+++GNKCD+ DK+ VS E  +  A + GI FMETSAK ++NVE AF  +  DIK +M  +   N+ +  +  +K     QK
Sbjct:   14 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSSHGVKITVEQQK 197          
The following BLAST results are available for this feature:
BLAST of CX069927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RYL1_YARLI2.207e-5452.66Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB8A_CHICK3.765e-5450.25Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB13_BOVIN3.765e-5454.80Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_HUMAN8.387e-5454.80Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB8_DISOM1.095e-5352.78Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8A_PONAB1.095e-5350.25Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB13_MESAU1.868e-5352.41Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB8B_BOVIN2.440e-5357.50Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB8A_RAT2.440e-5352.72Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE2.440e-5352.72Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069927 ID=CX069927; Name=CX069927; organism=Citrus sinensis; type=EST; length=845bp
GGGCGAAATTGGGTACCGCGGCCCCCCCTTTTTTTTAAAGAAAAAGAACA
ATTTAATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCAT
ATAATAGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAA
AACTAGTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTC
ACTGGTTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGC
AATGAAGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGT
TCACCGGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATT
GCAGGTTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAA
AGCTTGTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGA
TGCCAATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTC
TTATCAGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTC
ACTTGCATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGC
TCTCTTGGTCTGTAACATCATAAACAATGATAATGCCATGTGCTCCACGG
TAGTAGCTGCTAGTGATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCA
AATTTGGAGTCTTACAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAA
AGTCAACCCCAATAGTGCTAATGTAACTGTCCAGGTACGAATCATCAGCA
AATCTCAGAAGAAGACACGATTTGCCAACTCCAGAGTCTCCAATC
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