CX069927

Overview
NameCX069927
Unique NameCX069927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 59/158 (37.34%), Postives = 89/158 (56.33%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  +  V  + A+  A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRS-VDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 56/171 (32.75%), Postives = 92/171 (53.80%), Query Frame = -2
Query:  335 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASEN-VNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  D +T  L I DTAGQE +  +   Y R   G + VY +T + S++ +  +  +I R   ++ V  +LVGNK DL  ++ VS    +  A     PFME+SAK  +NVE+AF ++  +I+  +    +   A+
Sbjct:    9 VGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREIRKELKGDQSSGKAQ 178          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAS1_DROWI (Ras-like protein 1 OS=Drosophila willistoni GN=Ras85D PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDL    V + E A+  A + GIP++ETSAK  M V+ AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWNVQN-EQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAS1_DROGR (Ras-like protein 1 OS=Drosophila grimshawi GN=Ras85D PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.106e-21
Identity = 59/158 (37.34%), Postives = 90/158 (56.96%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G ++V+ V   +SF ++  +  +I R   +E V  +LVGNKCDL    V + E A+  A + GIP++ETSAK  M V+ AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLPSWNVQN-EQAREVAKQYGIPYIETSAKTRMGVDDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAP2C_MOUSE (Ras-related protein Rap-2c OS=Mus musculus GN=Rap2c PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.444e-21
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = -2
Query:  398 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 844
            +G  GVGKS L ++F   ++++ Y  TI  DF  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ V     +A A E G PFMETSAK    V++ F
Sbjct:    9 LGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAP2C_HUMAN (Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2C PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.444e-21
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = -2
Query:  398 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 844
            +G  GVGKS L ++F   ++++ Y  TI  DF  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ V     +A A E G PFMETSAK    V++ F
Sbjct:    9 LGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAP2C_BOVIN (Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.444e-21
Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = -2
Query:  398 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 844
            +G  GVGKS L ++F   ++++ Y  TI  DF  + +E D     L+I DTAG E+F ++   Y +   G I+VY + +Q+SF ++K   ++I R    E V  +LVGNK DL  ++ V     +A A E G PFMETSAK    V++ F
Sbjct:    9 LGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIVRVKRYEKVPLILVGNKVDLEPEREVMSSEGRALAQEWGCPFMETSAKSKSMVDELF 157          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASH_MSVMO (GTPase HRas OS=Moloney murine sarcoma virus GN=H-RAS PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-21
Identity = 61/173 (35.26%), Postives = 95/173 (54.91%), Query Frame = -2
Query:  329 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL  + V S + A+  A   GIP+++TSAK    VE AF  +  +I+     Q  +    PP
Sbjct:    9 VGAKGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIKTSAKTRQGVEDAFYTLVREIR-----QHKLRKLNPP 174          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASH_MSVHA (Transforming protein p29 OS=Harvey murine sarcoma virus GN=H-RAS PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-21
Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = -2
Query:  329 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DT GQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL  + V S + A+  A   GIP++ETSAK    VE AF  +  +I+     Q  +    PP
Sbjct:   61 VGARGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAGRTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLRKLNPP 226          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASH_CHICK (GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-21
Identity = 61/173 (35.26%), Postives = 93/173 (53.76%), Query Frame = -2
Query:  329 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL   + V    A+  A   GIP++ETSAK    VE AF  +  +I+     Q  +    PP
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-PARTVETRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLRKLNPP 174          
The following BLAST results are available for this feature:
BLAST of CX069927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_CARAU1.106e-2137.34Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RASD_DICDI1.106e-2132.75Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAS1_DROWI1.106e-2137.34Ras-like protein 1 OS=Drosophila willistoni GN=Ras... [more]
RAS1_DROGR1.106e-2137.34Ras-like protein 1 OS=Drosophila grimshawi GN=Ras8... [more]
RAP2C_MOUSE1.444e-2138.67Ras-related protein Rap-2c OS=Mus musculus GN=Rap2... [more]
RAP2C_HUMAN1.444e-2138.67Ras-related protein Rap-2c OS=Homo sapiens GN=RAP2... [more]
RAP2C_BOVIN1.444e-2138.67Ras-related protein Rap-2c OS=Bos taurus GN=RAP2C ... [more]
RASH_MSVMO1.886e-2135.26GTPase HRas OS=Moloney murine sarcoma virus GN=H-R... [more]
RASH_MSVHA1.886e-2135.26Transforming protein p29 OS=Harvey murine sarcoma ... [more]
RASH_CHICK1.886e-2135.26GTPase HRas OS=Gallus gallus GN=HRAS1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069927 ID=CX069927; Name=CX069927; organism=Citrus sinensis; type=EST; length=845bp
GGGCGAAATTGGGTACCGCGGCCCCCCCTTTTTTTTAAAGAAAAAGAACA
ATTTAATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCAT
ATAATAGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAA
AACTAGTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTC
ACTGGTTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGC
AATGAAGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGT
TCACCGGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATT
GCAGGTTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAA
AGCTTGTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGA
TGCCAATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTC
TTATCAGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTC
ACTTGCATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGC
TCTCTTGGTCTGTAACATCATAAACAATGATAATGCCATGTGCTCCACGG
TAGTAGCTGCTAGTGATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCA
AATTTGGAGTCTTACAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAA
AGTCAACCCCAATAGTGCTAATGTAACTGTCCAGGTACGAATCATCAGCA
AATCTCAGAAGAAGACACGATTTGCCAACTCCAGAGTCTCCAATC
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