CX069927

Overview
NameCX069927
Unique NameCX069927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-21
Identity = 56/164 (34.15%), Postives = 85/164 (51.83%), Query Frame = -2
Query:  356 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQ 844
            +G  GVGKS L ++F    ++D Y  TI   ++ + V  D +T  L + DTAGQE +  +   Y R   G ++VY +T + SF  V  +  +I R    ++   +LVGNKCDL   + VS +  +  A   G PF ETSAK  + V+  F  +  +I+     Q
Sbjct:   15 VGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDD-ETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVVREIRRMNKEQ 177          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB24_MOUSE (Ras-related protein Rab-24 OS=Mus musculus GN=Rab24 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.886e-21
Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = -2
Query:  281 IGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD----KKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQKA-----SCC 844
            +G   VGK+ L+ R+  D +L   Y +TIG  F  + +    +TV L IWDTAG ER+  ++  YYRGA   I+ YD+TD  SF   K W+ E+ R   E     L G K DL +    ++ V +   + +AD I     ETS+K   +V++ F  +  D  +  A Q    +        KG  ++QKA     SCC
Sbjct:   13 LGKEYVGKTSLVERYVHDRFLVGPYQNTIGAAFVAKVMCVGDRTVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKEL-RSLEEGCQIYLCGTKSDLLEEDRRRRRVDFHDVQDYADNIKAQLFETSSKTGQSVDELFQKVAEDYVSVAAFQVMTED--------KGVDLSQKANPYFYSCC 201          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAS_ARTSA (Ras-like protein (Fragment) OS=Artemia salina PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 62/175 (35.43%), Postives = 95/175 (54.29%), Query Frame = -2
Query:  314 GVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADI-KNRMASQPAMNNARPPTVQIK 832
            GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G ++V+ V + +SF ++  +  +I R   +E V  +LVGNKCDL   + V    A+  A + GIPF+ETSAK  M V+  F  +  +I K++M    +    R    Q+K
Sbjct:    2 GVGKSALTIQLIQNHFVDEYDPTIEDSYRQQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNNAKSFEDISAYREQIKRVKDAEEVPMVLVGNKCDL-PTRAVDMSQAREVARQYGIPFVETSAKTRMGVDDGFYTLVREIKKDKMKKGNSSRRGRSGRKQLK 174          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 51/149 (34.23%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  398 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 844
            +GD GVGK+ + ++F  + +++ Y  TI  D   +    D +   L I DTAGQ+    I + + +   G I+VY VT + SF+ ++ +L++I    SE V  +++ NK DL D++ V+Y+  + FA+  G+ FME SAK  +N+++ F
Sbjct:   20 MGDGGVGKTSITIQFISNHFVNCYDPTIE-DLYRKQCLIDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVF 167          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 58/158 (36.71%), Postives = 89/158 (56.33%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL   + V  + A+  A   GIPF+ETSAK    V+ AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PTRTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASK_MELGA (GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 58/158 (36.71%), Postives = 89/158 (56.33%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL   + V  + A+  A   GIPF+ETSAK    V+ AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 58/158 (36.71%), Postives = 89/158 (56.33%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL  +  V  + A+  A   GIPF+ETSAK    V+ AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRS-VDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 61/173 (35.26%), Postives = 94/173 (54.34%), Query Frame = -2
Query:  329 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L   DTAGQE +  +   Y R   G + V+ + + +SF ++ Q+  +I R   S++V  +LVGNKCDL  + V S + A+  A   GIP++ETSAK    VE AF  +  +I+     Q  +    PP
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDYLDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQ-AQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR-----QHKLRKLNPP 174          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB36_MOUSE (Ras-related protein Rab-36 OS=Mus musculus GN=Rab36 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.463e-21
Identity = 65/189 (34.39%), Postives = 100/189 (52.91%), Query Frame = -2
Query:  314 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDR-YASENVNKLLVGNKCDLTDKKVVSYETAKA--FADEIGIPFMETSAKDSMNVEQAFMAMTA---------DIKNRMASQPAMNNARPPTVQIK 844
            +GD  VGK+ L+ R   + +   Y +TIGVDF+I   E  G    LQIWDTAGQE+F+ I S+YYRGA  II  +D+TD ++  + +QWL ++ R   + +    LVG K DL          A+A   A+E+   +   SAK   NV+  F  + A         D++ R ++Q  + +     ++I+
Sbjct:   63 VGDLYVGKTSLIHRLCKNVFDHDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDVLRENEAGSCFIFLVGTKKDLLSGAACEQAEAEAVHLANEMQAEYWSVSAKTGENVKAFFSRVAALAFEQSVLQDLEKRPSTQSQVGDGDGDLIRIE 251          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASN_RAT (GTPase NRas OS=Rattus norvegicus GN=Nras PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 63/181 (34.81%), Postives = 95/181 (52.49%), Query Frame = -2
Query:  305 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQP 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I  R      +N++   T    G P
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI--RQYRMKKLNSSEDGTQGCMGLP 185          
The following BLAST results are available for this feature:
BLAST of CX069927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS3_RHIRA1.886e-2134.15Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAB24_MOUSE1.886e-2133.84Ras-related protein Rab-24 OS=Mus musculus GN=Rab2... [more]
RAS_ARTSA2.463e-2135.43Ras-like protein (Fragment) OS=Artemia salina PE=3... [more]
RASU_DICDI2.463e-2134.23Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RASK_ORYLA2.463e-2136.71GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RASK_MELGA2.463e-2136.71GTPase KRas OS=Meleagris gallopavo GN=KRAS PE=2 SV... [more]
RASK_CYPCA2.463e-2136.71GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]
RASH_MOUSE2.463e-2135.26GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]
RAB36_MOUSE2.463e-2134.39Ras-related protein Rab-36 OS=Mus musculus GN=Rab3... [more]
RASN_RAT3.217e-2134.81GTPase NRas OS=Rattus norvegicus GN=Nras PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069927 ID=CX069927; Name=CX069927; organism=Citrus sinensis; type=EST; length=845bp
GGGCGAAATTGGGTACCGCGGCCCCCCCTTTTTTTTAAAGAAAAAGAACA
ATTTAATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCAT
ATAATAGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAA
AACTAGTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTC
ACTGGTTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGC
AATGAAGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGT
TCACCGGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATT
GCAGGTTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAA
AGCTTGTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGA
TGCCAATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTC
TTATCAGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTC
ACTTGCATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGC
TCTCTTGGTCTGTAACATCATAAACAATGATAATGCCATGTGCTCCACGG
TAGTAGCTGCTAGTGATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCA
AATTTGGAGTCTTACAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAA
AGTCAACCCCAATAGTGCTAATGTAACTGTCCAGGTACGAATCATCAGCA
AATCTCAGAAGAAGACACGATTTGCCAACTCCAGAGTCTCCAATC
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