CX069927

Overview
NameCX069927
Unique NameCX069927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASN_PIG (GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASN_MONDO (GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASN_HUMAN (GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASN_CAVPO (GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 58/158 (36.71%), Postives = 88/158 (55.70%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   S++V  +LVGNKCDL   + V  + A   A   GIPF+ETSAK    VE AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASB_DICDI (Ras-like protein rasB OS=Dictyostelium discoideum GN=rasB PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = -2
Query:  365 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRM 844
            +G  GVGKS L ++F  + +++ Y  TI   ++ R  + D  T  L I DTAGQ+ +  +   Y R   G + VYDVT + SF  +     +I R   ++ V  +LVGNKCDL + + V+       A    +PF+ETSAK  +NV++ F  +  +IK  +
Sbjct:   12 MGGGGVGKSALTIQFIQNHFIEEYDPTIEDSYR-RQCQVDEDTCLLDILDTAGQDDYSAMRDQYMRTGQGFLCVYDVTSRTSFEEINVVREQIIRVKDNDKVPIVLVGNKCDLENLREVTEGEGSELAKSFSVPFLETSAKKRLNVDECFFEVVREIKKSL 171          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAS1_NEUCR (Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = -2
Query:  278 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR--------MASQPAMNNARPPTVQIKGQPVNQKASCCS 844
            +G  GVGKSCL ++     +LD Y  TI   ++ +    D +   L I DTAGQE +  +   Y R   G ++V+ +  +ESF  ++ +  +I R    ++   ++VGNK DL  ++VVS +  +A A E G  ++ETSAK   NVE AF  +  +I+            +  A NN     + +  + V  +A CC+
Sbjct:   14 VGGGGVGKSCLTIQLIQGHFLDEYDPTIEDSYR-KQCTIDNEVALLDILDTAGQEEYSAMREQYMRTGEGFLLVFAINSRESFEEIRIYQQQILRVKDRDSFPMIIVGNKYDLRGERVVSEQEGQALAAEFGTKYIETSAKTQHNVENAFYDLVREIRKEDKKLGEKVGGTSFANNNGAVKQMDVGDEDV--QAGCCA 208          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RABL_MIMIV (Probable Rab-related GTPase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R214 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.487e-21
Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = -2
Query:  389 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTV-EQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKK--VVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAM 844
            IG SGVGKS ++ +F  +  + +   TIG  F  + V  ++GKT++L IWDTAGQERFR+IT  YY  + G ++V+DVTD+ESF++V  W+N++          L+V NK D+ DK    VS    K F  +    ++  S+ +S  V   F  M
Sbjct:   19 IGSSGVGKSSIVHQFLFNRKISNVSPTIGAAFASKQVIAKNGKTLKLNIWDTAGQERFRSITKMYYTNSLGCLVVFDVTDRESFDDVYYWINDLRINCHTTYYILVVANKIDI-DKNNWRVSENEIKKFCRDNDCDYVFASSFESDTVNNLFGKM 172          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAP1_PHYPO (Ras-related protein Rap-1 OS=Physarum polycephalum GN=RAP1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.166e-21
Identity = 56/161 (34.78%), Postives = 90/161 (55.90%), Query Frame = -2
Query:  368 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEI-GIPFMETSAKDSMNVEQAFMAMTADIKNR 844
            +G  GVGKS L ++F    +++ Y  TI   ++ + VE DG+   L+I DTAG E+F  +   Y +   G ++VY +    +FN++     +I R    ++V  +LVGNKCDL +++V+S E     A +  G  F+E SAK+ +NVEQ F  +   I  +
Sbjct:   11 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIIAMSTFNDLPDLREQILRVKDCDDVPMVLVGNKCDLAEQRVISTEQGDELARKFGGCAFLEASAKNKINVEQIFYDLIRQINRK 170          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.360e-21
Identity = 61/174 (35.06%), Postives = 88/174 (50.57%), Query Frame = -2
Query:  329 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKL-LVGNKCDLTDK-KVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP 844
            +GD GVGKS L ++   + ++  Y  TI   ++ + V  D +   L I DTAGQE +  +   Y R   G +IVY +  + SF  V  +  +I R    +   + ++GNK DL DK + V     K  A   G PF+ETSAK  +NVE+AF  +  +IK R    P      PP
Sbjct:   10 VGDGGVGKSALTIQLTQNQFIAEYDPTIENSYR-KQVNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREIK-RWNQNPQNEEMLPP 181          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAPA_DICDI (Ras-related protein rapA OS=Dictyostelium discoideum GN=rapA PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.360e-21
Identity = 57/161 (35.40%), Postives = 88/161 (54.66%), Query Frame = -2
Query:  368 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIG-IPFMETSAKDSMNVEQAFMAMTADIKNR 844
            +G  GVGKS L ++F    +++ Y  TI   ++ + VE D     L+I DTAG E+F  +   Y +   G ++VY +    +FN +     +I R    E+V  +LVGNKCDL D++V+S E  +  A + G   F+E SAK+ +NVEQ F  +   I  +
Sbjct:   11 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDSNQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSIISNSTFNELPDLREQILRVKDCEDVPMVLVGNKCDLHDQRVISTEQGEELARKFGDCYFLEASAKNKVNVEQIFYNLIRQINRK 170          
The following BLAST results are available for this feature:
BLAST of CX069927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASN_PIG5.487e-2136.71GTPase NRas OS=Sus scrofa GN=NRAS PE=2 SV=1[more]
RASN_MONDO5.487e-2136.71GTPase NRas OS=Monodelphis domestica GN=NRAS PE=2 ... [more]
RASN_HUMAN5.487e-2136.71GTPase NRas OS=Homo sapiens GN=NRAS PE=1 SV=1[more]
RASN_CAVPO5.487e-2136.71GTPase NRas OS=Cavia porcellus GN=NRAS PE=2 SV=1[more]
RASB_DICDI5.487e-2134.78Ras-like protein rasB OS=Dictyostelium discoideum ... [more]
RAS1_NEUCR5.487e-2131.31Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 S... [more]
RABL_MIMIV5.487e-2139.35Probable Rab-related GTPase OS=Acanthamoeba polyph... [more]
RAP1_PHYPO7.166e-2134.78Ras-related protein Rap-1 OS=Physarum polycephalum... [more]
RASC_DICDI9.360e-2135.06Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RAPA_DICDI9.360e-2135.40Ras-related protein rapA OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069927 ID=CX069927; Name=CX069927; organism=Citrus sinensis; type=EST; length=845bp
GGGCGAAATTGGGTACCGCGGCCCCCCCTTTTTTTTAAAGAAAAAGAACA
ATTTAATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCAT
ATAATAGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAA
AACTAGTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTC
ACTGGTTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGC
AATGAAGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGT
TCACCGGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATT
GCAGGTTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAA
AGCTTGTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGA
TGCCAATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTC
TTATCAGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTC
ACTTGCATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGC
TCTCTTGGTCTGTAACATCATAAACAATGATAATGCCATGTGCTCCACGG
TAGTAGCTGCTAGTGATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCA
AATTTGGAGTCTTACAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAA
AGTCAACCCCAATAGTGCTAATGTAACTGTCCAGGTACGAATCATCAGCA
AATCTCAGAAGAAGACACGATTTGCCAACTCCAGAGTCTCCAATC
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