CX069927

Overview
NameCX069927
Unique NameCX069927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RASK_MONDO (GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = -2
Query:  374 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIK 844
            +G  GVGKS L ++   + ++D Y  TI   ++ + V  DG+T  L I DTAGQE +  +   Y R   G + V+ + + +SF ++  +  +I R   SE+V  +LVGNKCDL   + V  + A+  A   GIPF+ETSAK     + AF  +  +I+
Sbjct:    9 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGGDDAFYTLVREIR 164          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAP1B_XENTR (Ras-related protein Rap-1b OS=Xenopus tropicalis GN=rap1b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = -2
Query:  368 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 844
            +G  GVGKS L ++F    +++ Y  TI   ++ + VE DG+   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:    9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAP1B_XENLA (Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = -2
Query:  368 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 844
            +G  GVGKS L ++F    +++ Y  TI   ++ + VE DG+   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:    9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAP1B_DANRE (Ras-related protein Rap-1b OS=Danio rerio GN=rap1b PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.597e-20
Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = -2
Query:  368 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 844
            +G  GVGKS L ++F    +++ Y  TI   ++ + VE DG+   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:    9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAS2_HYDMA (Ras-like protein RAS2 OS=Hydra magnipapillata GN=RAS2 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.723e-20
Identity = 55/159 (34.59%), Postives = 88/159 (55.35%), Query Frame = -2
Query:  371 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS-ENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKN 844
            +G  GVGKS L ++F    ++  Y  TI   ++ + V  D K   L I DTAGQE F  +   Y R   G ++V+ VTD+ SF+ + ++  +I R    E    +LVGNK DL +++ VS   A+    ++ + ++E+SAK  +NV+ AF  +   I+N
Sbjct:   14 VGGGGVGKSALTIQFIQSHFVQDYDPTIEDSYRKQCVIDD-KVAHLDILDTAGQEEFSAMRDEYMRTGEGFLLVFSVTDRSSFDEIPRFHTQILRVKDIEEFPMILVGNKSDLENERTVSTAEAQELGRKLKVSYLESSAKQRINVDAAFHDLVRAIRN 171          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.723e-20
Identity = 56/161 (34.78%), Postives = 91/161 (56.52%), Query Frame = -2
Query:  368 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA-SENVNKLLVGNKCDLTDKKVVSYETAKAFADE-IGIPFMETSAKDSMNVEQAFMAMTADIKNR 844
            +G  GVGKS L ++F    +++ Y  TI   ++ + VE DG+   L+I DTAG E+F  +   Y +   G  +VY +T Q +FN+++    +I R   +++V  +LVGNKCDL D++VV  E  +  A +     F+E+SAK  +NV + F  +   I  +
Sbjct:    9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINRK 168          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.723e-20
Identity = 55/157 (35.03%), Postives = 91/157 (57.96%), Query Frame = -2
Query:  398 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL--TDKKVVS---YETAKAFADE---IGIPFMETSAKDSMNVEQAF 844
            +GDS VGK+ L   + +  Y  +   +IG D+ I+ ++ + K V L +WDT GQERF+  +  Y+RGA+   + +D+ ++ESF N+ +W++EI +Y   N+  +LVG K D+  TDK +      +  K   D+     + + ETSAK S NV + +
Sbjct:   13 LGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNVTELY 169          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RB32B_DICDI (Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 62/195 (31.79%), Postives = 97/195 (49.74%), Query Frame = -2
Query:  281 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVE-QDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYA----SENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKN--RMASQPAMNNARPPTVQIKGQPVNQKASCC 844
            IGD  VGKS ++ R+    +  +Y  TIGVDF ++ +E +  K V LQ+WD AG ERF T+T  YYR A   IIV+D++   +F+ V +W  +++        E +  LL+ NK DL+   V S    +   +   I +  TSA +  N+ +A   +T +I    +    P          +  G+  +   SCC
Sbjct:   65 IGDYAVGKSSIIKRYCTGIFSPNYKLTIGVDFSVKDIEWEKNKIVSLQLWDIAGHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPIPVLLLANKSDLSTSYVDSEMLDRFCKENNFIGWFATSASNDTNINEAMHFLTKEILEVAKTNHPPKPEEDTLELTKTNGEKSDDSKSCC 259          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.557e-20
Identity = 63/192 (32.81%), Postives = 94/192 (48.96%), Query Frame = -2
Query:  281 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT---DKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPP-TVQIKGQPVNQKASCC 844
            +G + VGK+C++ R+    + D++ +TIG  F  + V      V L IWDTAG ER++ +  SYYR A+  I+ YD+T++ES+  V  W  E+ +   E +   +VG K DL    D K V  E  K  A        ETS++   NV   F  +  D   R  +     N+ P   V +  Q   +K  CC
Sbjct:   13 LGYASVGKTCIVTRYTSGQFGDTH-TTIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEELTQNEPE-IEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRTGENVSLLFQTIAEDFCKRTNNGTNPVNSNPSNVVNVNTQTQKKKGGCC 202          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RBL2A_HUMAN (Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.645e-20
Identity = 54/149 (36.24%), Postives = 82/149 (55.03%), Query Frame = -2
Query:  398 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAF 844
            +GDS VGKS L+ RF  D +    +ST  +     T   DGKT+ +  WDTAGQERF+++ +SYY  AH  I+V+D+  + ++ N+  W  E+  +  E +  ++V NK D  +    S+  AK F+    +P    SA D  NV + F
Sbjct:   27 LGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTILVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELREFRPE-IPCIVVANKIDDINVTQKSFNFAKKFS----LPLYFVSAADGTNVVKLF 170          
The following BLAST results are available for this feature:
BLAST of CX069927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASK_MONDO1.597e-2036.08GTPase KRas OS=Monodelphis domestica GN=KRAS PE=1 ... [more]
RAP1B_XENTR1.597e-2034.78Ras-related protein Rap-1b OS=Xenopus tropicalis G... [more]
RAP1B_XENLA1.597e-2034.78Ras-related protein Rap-1b OS=Xenopus laevis GN=ra... [more]
RAP1B_DANRE1.597e-2034.78Ras-related protein Rap-1b OS=Danio rerio GN=rap1b... [more]
RAS2_HYDMA2.723e-2034.59Ras-like protein RAS2 OS=Hydra magnipapillata GN=R... [more]
RAP1B_CYPCA2.723e-2034.78Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RABL_DICDI2.723e-2035.03Ras-related protein RabL OS=Dictyostelium discoide... [more]
RB32B_DICDI3.557e-2031.79Ras-related protein Rab-32B OS=Dictyostelium disco... [more]
RAB24_DICDI3.557e-2032.81Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
RBL2A_HUMAN4.645e-2036.24Rab-like protein 2A OS=Homo sapiens GN=RABL2A PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069927 ID=CX069927; Name=CX069927; organism=Citrus sinensis; type=EST; length=845bp
GGGCGAAATTGGGTACCGCGGCCCCCCCTTTTTTTTAAAGAAAAAGAACA
ATTTAATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCAT
ATAATAGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAA
AACTAGTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTC
ACTGGTTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGC
AATGAAGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGT
TCACCGGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATT
GCAGGTTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAA
AGCTTGTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGA
TGCCAATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTC
TTATCAGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTC
ACTTGCATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGC
TCTCTTGGTCTGTAACATCATAAACAATGATAATGCCATGTGCTCCACGG
TAGTAGCTGCTAGTGATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCA
AATTTGGAGTCTTACAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAA
AGTCAACCCCAATAGTGCTAATGTAACTGTCCAGGTACGAATCATCAGCA
AATCTCAGAAGAAGACACGATTTGCCAACTCCAGAGTCTCCAATC
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