CX069927

Overview
NameCX069927
Unique NameCX069927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 9.931e-47
Identity = 90/190 (47.37%), Postives = 135/190 (71.05%), Query Frame = -2
Query:  281 IGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR-PPTVQIKGQPVNQKASCC 844
            +GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  V+LQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T ++VV  E  +  A E G+PFMETSAK  +NV+ AF A+  ++K R    P+    R    V+ +G+ V    SCC
Sbjct:   70 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSEPRFRLHDYVKREGRGV----SCC 255          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.297e-46
Identity = 84/159 (52.83%), Postives = 117/159 (73.58%), Query Frame = -2
Query:  368 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNR 844
            +GDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK ++LQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+E+    LVGNKCD    + VS E  +  A ++ +PF+E SAK + NV+  F  + + I+ +
Sbjct:   20 VGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.297e-46
Identity = 90/192 (46.88%), Postives = 134/192 (69.79%), Query Frame = -2
Query:  278 IGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQK--ASCCS 844
            +GDSGVGK+C L++F D ++L  ++I+T+G+D + + V  DG  V+LQIWDTAGQERFR++T +YYR A  ++++YD+T+Q SF+N++ WL EI  YA  +V  +L+GNK D++ ++V+  E  +  A E G+PFMETSAK  MNVE AF+A+  ++K R   QP       P+ QI+    +QK  +SCCS
Sbjct:   35 LGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQP-----DEPSFQIRDYVESQKKRSSCCS 221          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.694e-46
Identity = 87/191 (45.55%), Postives = 137/191 (71.73%), Query Frame = -2
Query:  284 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASC 844
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K ++LQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ D++V+S E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T ++K  P   + +C
Sbjct:   36 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 1.694e-46
Identity = 87/191 (45.55%), Postives = 137/191 (71.73%), Query Frame = -2
Query:  284 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASC 844
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K ++LQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +LVGNKCD+ D++V+S E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T ++K  P   + +C
Sbjct:   36 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQNT-RLKETPPPPQPNC 225          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.694e-46
Identity = 90/190 (47.37%), Postives = 135/190 (71.05%), Query Frame = -2
Query:  281 IGDSGVGKSCLLLRFADDSYL-DSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNAR-PPTVQIKGQPVNQKASCC 844
            +GDSGVGK+CLL+RF D ++L  ++IST+G+DF+ + ++ DG  V+LQIWDTAGQERFR++T +YYR AH ++++YD+T+++SF+N++ WL EI  YA ++V  +L+GNK D T  +VV  E  +  A E G+PFMETSA+  +NV+ AF A+  ++K R A  P+    R    V+ +G+ V    SCC
Sbjct:   73 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPSEPRFRLHDYVKREGRGV----SCC 258          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.212e-46
Identity = 89/196 (45.41%), Postives = 134/196 (68.37%), Query Frame = -2
Query:  284 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQ---------PVNQKASC 844
            IG+S VGK+  L R+ DDS+  +++ST+G+DFK++TV +  K V+LQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN+V+ W  +I  Y+ EN   +LVGNKCD+  ++VVS +  +  AD++G+ F ETSAK+++NV+  F  +   I ++MA     +  + P  Q KGQ         P  Q+ +C
Sbjct:   28 IGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAE----SLDKDPQQQPKGQKLEANPTQKPAQQQCNC 219          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB3C_RAT (Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.212e-46
Identity = 87/191 (45.55%), Postives = 136/191 (71.20%), Query Frame = -2
Query:  284 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASC 844
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K ++LQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+ D++VVS E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T ++K  P   + +C
Sbjct:   36 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB3C_MOUSE (Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.212e-46
Identity = 87/191 (45.55%), Postives = 136/191 (71.20%), Query Frame = -2
Query:  284 IGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMA----SQPAMNNARPPTVQIKGQPVNQKASC 844
            IG+S VGK+  L R+ADDS+  +++ST+G+DFK++TV ++ K ++LQIWDTAGQER+RTIT++YYRGA G I++YD+T++ESFN V+ W  +I  Y+ +N   +L GNKCD+ D++VVS E  +   +++G  F ETSAKD++NV+Q F  +   I ++M+    + PA+  A+  T ++K  P   + +C
Sbjct:   36 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSESLETDPAITAAKQST-RLKETPPPPQPNC 225          
BLAST of CX069927 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.929e-46
Identity = 88/192 (45.83%), Postives = 135/192 (70.31%), Query Frame = -2
Query:  278 IGDSGVGKSCLLLRFADDSYLD-SYISTIGVDFKIRTVEQDGKTVRLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTDKKVVSYETAKAFADEIGIPFMETSAKDSMNVEQAFMAMTADIKNRMASQPAMNNARPPTVQIKGQPVNQK--ASCCS 844
            +GD+GVGK+C L++F D ++L  ++I+T+G+DF+ + V  DG  V+LQIWDTAGQERFR++T +YYR A  ++++YD+T++ SF+N++ WL EI  YA  +V  +L+GNK D++ ++V+  E  +  A E G+PF+ETSAK  MNVE AF+A+  ++K R   Q     A  P+ QI+    +QK  +SCCS
Sbjct:   35 LGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQ-----ADEPSFQIRDYVESQKKRSSCCS 221          
The following BLAST results are available for this feature:
BLAST of CX069927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB26_RAT9.931e-4747.37Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
SEC4_CANAL1.297e-4652.83Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB37_MOUSE1.297e-4646.88Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB3C_HUMAN1.694e-4645.55Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN1.694e-4645.55Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB26_MOUSE1.694e-4647.37Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RAB3_CAEEL2.212e-4645.41Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB3C_RAT2.212e-4645.55Ras-related protein Rab-3C OS=Rattus norvegicus GN... [more]
RAB3C_MOUSE2.212e-4645.55Ras-related protein Rab-3C OS=Mus musculus GN=Rab3... [more]
RAB37_HUMAN4.929e-4645.83Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13G01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13G01-M1-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069927 ID=CX069927; Name=CX069927; organism=Citrus sinensis; type=EST; length=845bp
GGGCGAAATTGGGTACCGCGGCCCCCCCTTTTTTTTAAAGAAAAAGAACA
ATTTAATAACATTTGCCACTATCAAGCAACACATCATTTGTACATGCCAT
ATAATAGTAATATAGACTGAAAGAATTGAAATTTCACAATAACTTACAAA
AACTAGTAAAGCAATCCGTCATATGATTCATGGGGTAGGAATAGTTTTTC
ACTGGTTCCTACAACGTGATTGAGAAAGCTACCCATAAACAAATGCACGC
AATGAAGGATAAGACAAACGATTAAGTTGAGCAGCAGCTGGCCTTCTGGT
TCACCGGTTGTCCTTTTATCTGCACAGTTGGTGGCCTTGCATTGTTCATT
GCAGGTTGACTTGCCATCCTGTTCTTAATGTCAGCAGTCATAGCCATAAA
AGCTTGTTCCACGTTCATAGAATCCTTTGCGCTGGTCTCCATGAACGGGA
TGCCAATTTCATCAGCAAATGCCTTCGCTGTTTCATAAGAGACAACCTTC
TTATCAGTGAGATCACACTTGTTTCCAACCAGAAGCTTGTTTACATTTTC
ACTTGCATAGCGATCAATTTCATTCAACCACTGCTTAACGTTGTTGAAGC
TCTCTTGGTCTGTAACATCATAAACAATGATAATGCCATGTGCTCCACGG
TAGTAGCTGCTAGTGATTGTCCTGAATCGTTCTTGCCCTGCAGTGTCCCA
AATTTGGAGTCTTACAGTCTTCCCGTCTTGCTCCACTGTGCGAATTTTAA
AGTCAACCCCAATAGTGCTAATGTAACTGTCCAGGTACGAATCATCAGCA
AATCTCAGAAGAAGACACGATTTGCCAACTCCAGAGTCTCCAATC
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