CX069926

Overview
NameCX069926
Unique NameCX069926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RA51B_XENLA (DNA repair protein RAD51 homolog B OS=Xenopus laevis GN=rad51-B PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 52/113 (46.02%), Postives = 66/113 (58.41%), Query Frame = -3
Query:   12 RHKASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 350
            R +  GI A DVKKL+DAG  TVE+VAY+P+KELL IKGISEAK +KI+                                  A+KLVP+GFT+AT+ H +R EIIQI +GS+
Sbjct:   24 RLEQCGINANDVKKLEDAGFHTVEAVAYAPKKELLNIKGISEAKAEKIL--------------------------------AEAAKLVPMGFTTATEFHQRRSEIIQIGTGSK 104          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RA51A_XENLA (DNA repair protein RAD51 homolog A OS=Xenopus laevis GN=rad51-A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.920e-16
Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = -3
Query:   12 ARHKASGIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR 353
            +R +  GI A DVKKL++AG  TVE+VAY+P+KELL IKGISEAK +KI+                                  A+KLVP+GFT+AT+ H +R EIIQI++GS+
Sbjct:   23 SRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELLNIKGISEAKAEKIL--------------------------------AEAAKLVPMGFTTATEFHQRRSEIIQISTGSK 104          
BLAST of CX069926 vs. ExPASy Swiss-Prot
Match: RAD51_USTMA (DNA repair protein RAD51 OS=Ustilago maydis GN=RAD51 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.570e-14
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = -3
Query:    3 GIAALDVKKLKDAGLCTVESVAYSPRKELLQIKGISEAKVDKIIEAGXXXXXXXXXXXXXXXSCQCFCERASYVFFMAASKLVPLGFTSATQLHAQRLEIIQITSGSR------GGG 335
            GI++ D KKL ++G  TVES+A++P+K+LL +KG+SEAK DKI+                                  A++LVP+GFT+AT+ HA+R E+I IT+GS+      GGG
Sbjct:   32 GISSSDCKKLAESGYNTVESIAFTPKKQLLLVKGVSEAKADKIL--------------------------------AEAARLVPMGFTTATEFHARRNELISITTGSKNLDAILGGG 116          
The following BLAST results are available for this feature:
BLAST of CX069926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RA51B_XENLA2.920e-1646.02DNA repair protein RAD51 homolog B OS=Xenopus laev... [more]
RA51A_XENLA2.920e-1644.74DNA repair protein RAD51 homolog A OS=Xenopus laev... [more]
RAD51_USTMA3.570e-1439.32DNA repair protein RAD51 OS=Ustilago maydis GN=RAD... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F12-K23-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069926 ID=CX069926; Name=CX069926; organism=Citrus sinensis; type=EST; length=811bp
CCGCCGCCCCCCCTCGAGCCAGATGTTATTTGAATTATCTCAAGCCTCTG
GGCATGGAGTTGGGTAGCACTGGTGAAACCCAGGGGCACAAGTTTGGAAG
CTGCCATGAAAAAAACATACGAAGCTCTTTCACAAAAGCATTGACAAGAA
TGAGCTGAAAAAAAAAAGAGTCAGTGTGGTAAAGACAAAGACAAGCCTGC
TTCAATGATCTTGTCAACTTTTGCTTCGCTGATTCCTTTAATTTGCAGAA
GTTCTTTCCTGGGGGAGTAAGCAACAGATTCAACTGTGCAAAGACCCGCA
TCTTTCAGCTTCTTGACGTCAAGAGCAGCAATGCCTGATGCCTTGTGTCG
AGCATTAGAAGAACCAAAAATGTTATTAAGCATAAAAATGCATGTGAAAA
CAAACCATCCAAATTGGCCAAGTCAGAATATTGATAAACAACAGCTTAGT
TCAAAGATTAAAAACAAATTCATCCATGAGCACTAATTTGAGCAACCCAA
GCAAAAGACTAGGCCGAGATTAGGGTAAGTCGTGTCTTGAAGGACACCAC
ACAAGAGTGAAAATCTTATAAAGAATTAAATAAACGCTTCAATTTCACAA
TATAGGAAACAATTACAAGAAAATTAACCCTAGAATTCAATAAAAAGAAA
TAACAGCTTTCATCACATTCAAGGAAACTAGAGTAAACCAATCAAAAATG
CAGCTAAAGAAGCCATCTTTTTAGCAAAATAAAAACAACCCATATCAATT
ACATAATCAAGGAAAATATTTTTCAAGTGACTTCAGAAGGGAAAAAAGAA
AAAAAAAAACT
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