CX069924

Overview
NameCX069924
Unique NameCX069924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12402 contig Csv1_Contig12402:455..1102. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 39/124 (31.45%), Postives = 73/124 (58.87%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHGLTLPTCLQ 373
            +A  Y MN EFS VL+ Q++++S++   D++   + ++ +++ +M+ NID V +RG+RLELL+DKT N+  ++  F+  +R     +  +N+KLT+              + +C G T P C++
Sbjct:   96 TALPYAMNSEFSSVLAAQLKHHSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIISVVFIYIIVSPLCGGFTWPNCVK 219          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 40/117 (34.19%), Postives = 71/117 (60.68%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHG 349
            +A+A  +N EF   L + M+Y +D P    +++++K ++++V+ VM+ENI+KVL+RG+++ELLVDKT N++     FR Q  + +  +W+ N+K+ +                VCHG
Sbjct:  100 TAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHG 216          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.160e-16
Identity = 42/117 (35.90%), Postives = 69/117 (58.97%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHG 349
            +AQA  +N EF   L + M+Y  D P+   ++ ++K ++S+V+ VM+ENI+KVL+RG+++ELLVDKT N++     FR    + R  +W +N+K+ +                VCHG
Sbjct:  100 TAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHG 216          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.514e-16
Identity = 39/95 (41.05%), Postives = 66/95 (69.47%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 283
            +AQA  +N EF   L + M+Y  D P+   ++ ++K ++S+V+ VM+ENI+KVL+RG+++ELLVDKT N++     FR Q  + R  +W++N+K+
Sbjct:  100 TAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKI 194          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 5.755e-16
Identity = 38/95 (40.00%), Postives = 65/95 (68.42%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 283
            +AQA  +N EF   L + M+Y  D P+   ++ ++K ++++V+ VM+ENI+KVL+RG+++ELLVDKT N++     FR Q  + R  +W+ N+K+
Sbjct:  165 TAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKI 259          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.085e-14
Identity = 36/117 (30.77%), Postives = 67/117 (57.26%), Query Frame = 2
Query:    2 SAQAYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVAXXXXXXXXXXXXXAFVCHG 349
            +A A  +N EF  V+ + M Y  D     +++ ++K ++S+V+++M+ENIDK ++RG+ L +L DKT N++     ++KQ  + R  +W++N+K+ +                VCHG
Sbjct:  101 TAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHG 217          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.158e-14
Identity = 32/92 (34.78%), Postives = 65/92 (70.65%), Query Frame = 2
Query:   11 AYGMNDEFSRVLSQQMEYYSDDPNA-DRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKL 283
            AY ++ EF  +L + M+Y    P    +++++K ++++V+ +M++NI+KVL+RG+++ELLVDKT N+Q     F++Q R+ R  +W +++++
Sbjct:  122 AYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQM 213          
BLAST of CX069924 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.047e-13
Identity = 30/89 (33.71%), Postives = 60/89 (67.42%), Query Frame = 2
Query:   26 DEFSRVLSQQMEYYSDDPNADRINRIKGEMSQVRNVMIENIDKVLERGDRLELLVDKTANMQGNTFRFRKQARRFRSTVWWRNVKLTVA 292
            D F RVL ++M+YYS+ P ++++N +  ++S+ +  + + I+K + RG+++E++VDKT  +Q  +F F+  +   +  +WW+N KL +A
Sbjct:  106 DPFIRVLEERMKYYSN-PKSNKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKKLAIA 193          
The following BLAST results are available for this feature:
BLAST of CX069924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
VAMP7_BOVIN5.205e-1731.45Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VA726_ARATH5.205e-1734.19Putative vesicle-associated membrane protein 726 O... [more]
VA721_ARATH1.160e-1635.90Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA722_ARATH1.514e-1641.05Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA725_ARATH5.755e-1640.00Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA724_ARATH1.085e-1430.77Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH3.158e-1434.78Vesicle-associated membrane protein 727 OS=Arabido... [more]
VAM7A_DICDI2.047e-1333.71Vesicle-associated membrane protein 7A OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F10-K19-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069924 ID=CX069924; Name=CX069924; organism=Citrus sinensis; type=EST; length=648bp
TTCAGCCCAAGCTTATGGCATGAATGATGAATTTTCAAGGGTCTTGAGCC
AGCAAATGGAGTATTATTCAGATGACCCAAATGCTGATAGGATAAATAGA
ATTAAAGGTGAAATGAGCCAGGTAAGAAATGTCATGATAGAGAACATTGA
CAAAGTTTTAGAAAGAGGTGACCGCTTGGAACTGTTGGTTGATAAAACTG
CTAATATGCAAGGAAACACGTTCCGCTTCAGAAAGCAGGCTAGGCGTTTC
AGAAGCACAGTATGGTGGAGAAACGTCAAGCTCACGGTTGCGCTGATTAT
CCTCATCCTCGTGATTGTTTATGTTGTCCTGGCTTTTGTTTGCCATGGAC
TTACTCTACCTACCTGCCTGCAGTGAGGGCTAAAGTGGAGTGGGATCTAA
ATTGTGTTCTTTTTCTTAGTTTGTTTCCCCCTTCTATATGGGTATGTGGG
ATTTTGCAGTCTCAGCTTTCTCCGCTGCTGCAATGAGAATTGAGAAGCAA
TCTTTGTGTGCATGCTTGTGTTAATGTCTCGCATGGAGATACAAACTAGT
TCATATTGTATGACTTGGTGAGTTTAAATTCATGAAAGACTAATTTTTTG
GTGTAAAATCTTAAACCCCGATGTCTCCATTAATATTTCCCCAAGGCT
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