CX069918

Overview
NameCX069918
Unique NameCX069918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.139e-20
Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+    +   ++L +K L + + S
Sbjct:   47 KKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.139e-20
Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+    +   ++L +K L + + S
Sbjct:   47 KKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.993e-20
Identity = 53/151 (35.10%), Postives = 78/151 (51.66%), Query Frame = -1
Query:  288 KMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 737
            K+ +I  H+ C  +G+  D  IL+  AR  A  Y   Y E MP  QLV  +    Q YTQ GG+RPFG S L AGWDKN G   L+  DPSG Y  WK           ++ L++ + + +  ++ +  AL  L ++ D   +  + +E+A
Sbjct:   60 KVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVA 209          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.035e-19
Identity = 50/152 (32.89%), Postives = 81/152 (53.29%), Query Frame = -1
Query:  327 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM 782
            KKVT K +   T T  +++I   + CA+ G ++D+   +  AR +A  + Y Y   MPV+ L + + D  Q YTQ   +RP G S +   +D   G  +Y +DP+G + G+K            S L++ YK ++S E+A+QLA+  LS  +
Sbjct:   54 KKVTEKNIVPETVTH-LFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVL 204          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.035e-19
Identity = 62/173 (35.84%), Postives = 89/173 (51.45%), Query Frame = -1
Query:  267 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQR-YTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPS 782
            KK TS+L     S EK+  I   +    +G+  D  +L++ +R  AQ  Y   Y E  P + LVQ +    Q  TQ GG+RPFGVS L AG D+  G  LY  DPSG Y  WK           ++ L++ Y D++  ++AV  A+  L +T +   LT D +E+A V   P+
Sbjct:   49 KKPTSELA-IGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEG-ELTEDNIEIAVVSTKPT 218          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.657e-19
Identity = 59/153 (38.56%), Postives = 84/153 (54.90%), Query Frame = -1
Query:  324 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMD 782
            K++ S L++ S S EK++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L + + D  Q YTQ GG RPFGV+ +  G   N   +L+ +DPSG    WK           +  L++ Y + +  +E V LAL  L+   D
Sbjct:   54 KRIRSPLMERS-SVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGG-IVNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASVND 204          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.657e-19
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++ + VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y D+    +   ++L +K L + + S
Sbjct:   47 KKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.657e-19
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +D++V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L++ Y D+    +   ++L +K L + + S
Sbjct:   47 KKSVAKL-QDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.657e-19
Identity = 53/156 (33.97%), Postives = 85/156 (54.49%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +D++V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L++ Y D+    +   ++L +K L + + S
Sbjct:   47 KKSVAKL-QDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKHYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.470e-19
Identity = 54/158 (34.18%), Postives = 90/158 (56.96%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWD-KNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDY---KDDISREEAVQLALKVLSKTMDS 782
            ++ T KL  T  +  K+ KID HV  + +G+ +D+ ILI  ARV+AQ +    ++P+ VE L + +   +Q YTQ GG+RPFGVS L AG+D ++   +LY ++PSG Y  W            +  L+++Y   +   + EE V+L ++ L + + +
Sbjct:   48 RRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT 205          
The following BLAST results are available for this feature:
BLAST of CX069918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PSA7_HUMAN3.139e-2034.62Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSA7_BOVIN3.139e-2034.62Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA2_CAEEL6.993e-2035.10Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA6_DROME2.035e-1932.89Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA2_SCHPO2.035e-1935.84Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSMA1_HALMA2.657e-1938.56Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA7_PONAB2.657e-1933.97Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA7B_XENLA2.657e-1933.97Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA2.657e-1933.97Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]
PSA7_YEAST3.470e-1934.18Proteasome component PRE6 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069918 ID=CX069918; Name=CX069918; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTGCATCCAACATCATAACATCTGAAATTACCAAGC
TTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTGGGCAAAAA
GCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTAAGTTATA
ATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGGTTGGGT
TACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGCAAACTT
GGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAATTCAAGC
TTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCACCTTCAG
TGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAATCTTGTT
TGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCAGCTTTC
CAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAAGCCATA
ATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGCGGAGAC
CGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGAACAAGC
TGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTGGGCTTG
GACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTCCAGCTA
CGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTGGAAGTT
GAGGTTTGCAGGAGCTTCGAAGTAACCTTCTT
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