CX069918

Overview
NameCX069918
Unique NameCX069918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:278..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_TRYBB (Proteasome subunit alpha type-2 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.743e-24
Identity = 63/167 (37.72%), Postives = 91/167 (54.49%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            KK TS L  + T   K++ +DDHV C  +GI  D  +L++ AR   QRY   Y EPMP+ QLV+ +    Q +TQ GG+RPFG S L AG D   G  LY  DPSG +  WK           ++ L++ Y +++  E+AV  AL  L +  D   +T++  ++  V
Sbjct:   48 KKTTSPLADSLT-LHKVFALDDHVGCTYSGIGPDCRVLVDAARRACQRYRLTYHEPMPISQLVRQISFLFQEFTQSGGVRPFGCSLLVAGADSR-GNHLYQLDPSGTFWTWKATSIGKGSPDARTFLEKRYTNEMEIEDAVHTALLTLKEGFDG-RMTAENTQVGRV 211          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 2.743e-24
Identity = 58/164 (35.37%), Postives = 90/164 (54.88%), Query Frame = -1
Query:  291 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 782
            +K    +L    S  K+  I  H+    +G+  D  +L+  AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L AGWD++  + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T + +E+
Sbjct:   49 EKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDRPY-LFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEENIEV 210          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 67/200 (33.50%), Postives = 112/200 (56.00%), Query Frame = -1
Query:  195 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEA----LSKLLVKHGVTQ 782
            K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D     +L+ +DPSG    +K             + + DYK+D++ E A+ L +  L K  +     +  LE+  V L      K++   PE     + ++L KH  T+
Sbjct:   51 KRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDKRP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKEDMNIEAAILLGMDALYKAAEG-KFDAGTLEVGVVSLQDK---KFRKLEPEEVGNYVQQILEKHKETE 244          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.583e-24
Identity = 63/170 (37.06%), Postives = 101/170 (59.41%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            K++TS LL+ S S EK+ +IDDH+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  DI+ +EA  +A+ +L + M+   +T + +++A+V
Sbjct:   52 KRITSPLLEPS-SVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 59/155 (38.06%), Postives = 94/155 (60.65%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 782
            KK T+KL Q + S  K+  +DDH+A A AG+ +DA +LIN ARV+ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D   G   LY +DPSG +  WK           +  L++++K + S +E V+LA++ L + ++S
Sbjct:   48 KKSTAKL-QDTRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFK-ETSGQETVKLAIRALLEVVES 200          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA5_SOYBN (Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 62/170 (36.47%), Postives = 101/170 (59.41%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            K++TS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q+LCD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ +  D++ +EA  +AL +L + M+   +T + +++A+V
Sbjct:   52 KRITSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNGKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = -1
Query:  291 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 782
            +K    +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   49 EKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = -1
Query:  291 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 782
            +K    +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   49 EKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = -1
Query:  291 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 782
            +K    +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   49 EKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 7.982e-24
Identity = 57/164 (34.76%), Postives = 89/164 (54.27%), Query Frame = -1
Query:  291 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLEL 782
            +K    +L    S  K+  I  H+    +G+  D  +L++ AR  AQ+Y   YQEP+P  QLVQ +    Q YTQ GG+RPFGVS L  GW++   + L+ SDPSG Y  WK           ++ L++ Y +D+  E+A+  A+  L ++ +   +T D +E+
Sbjct:   49 EKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPY-LFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG-QMTEDNIEV 210          
The following BLAST results are available for this feature:
BLAST of CX069918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PSA2_TRYBB2.743e-2437.72Proteasome subunit alpha type-2 OS=Trypanosoma bru... [more]
PSA2_CARAU2.743e-2435.37Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSMA_METTE3.583e-2433.50Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSA5B_ARATH3.583e-2437.06Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA7_CICAR7.982e-2438.06Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSA5_SOYBN7.982e-2436.47Proteasome subunit alpha type-5 OS=Glycine max GN=... [more]
PSA2_RAT7.982e-2434.76Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE7.982e-2434.76Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA2_HUMAN7.982e-2434.76Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN7.982e-2434.76Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069918 ID=CX069918; Name=CX069918; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTGCATCCAACATCATAACATCTGAAATTACCAAGC
TTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTGGGCAAAAA
GCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTAAGTTATA
ATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGGTTGGGT
TACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGCAAACTT
GGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAATTCAAGC
TTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCACCTTCAG
TGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAATCTTGTT
TGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCAGCTTTC
CAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAAGCCATA
ATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGCGGAGAC
CGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGAACAAGC
TGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTGGGCTTG
GACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTCCAGCTA
CGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTGGAAGTT
GAGGTTTGCAGGAGCTTCGAAGTAACCTTCTT
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