CX069918

Overview
NameCX069918
Unique NameCX069918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.042e-23
Identity = 58/152 (38.16%), Postives = 91/152 (59.87%), Query Frame = -1
Query:  327 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM 782
            KK  S+LL    S EK++ +DDHV C+ AG+ SD  ILI+ AR  + ++   Y EP+ ++ L + + D KQ YTQ GG+RPFGV+ +  G D+    +L+M++PSG +  ++              L+++YK+D+S EE + LAL  L  T+
Sbjct:   54 KKKASQLLDVD-SIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGV-TKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKEDLSVEETILLALNALKVTL 203          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA5_ORYSJ (Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica GN=PAE1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.042e-23
Identity = 62/170 (36.47%), Postives = 101/170 (59.41%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGY---TQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            K+VTS LL+ S S EK+ +ID+H+ CA++G+++DA  L+  ARV+ Q + ++Y EPM VE   Q++CD    +    +    RPFGVS L AG D+N G  LY +DPSG +                S L++ Y  +++ +EA  +AL +L + M+   +T + +++A+V
Sbjct:   52 KRVTSPLLEPS-SVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVMEE-KVTPNNVDIAKV 218          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_PICTO (Proteasome subunit alpha OS=Picrophilus torridus GN=psmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.778e-23
Identity = 64/189 (33.86%), Postives = 109/189 (57.67%), Query Frame = -1
Query:  216 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 782
            KKV S+L++  TS EK+  IDD VA   +G+++DA +LI+ AR+  Q+    Y   M +E LV+ + D  Q YTQ+GG+RP+GVS +FAG D + G +L+  DP+G    +K            + L+++YK+++S +EA+++ +  L   +   S     ++  E+  +  G+  + V + E +SK L
Sbjct:   52 KKVRSRLVE-KTSLEKIQLIDDRVAAVTSGLVADARVLIDFARISDQQEKVTYGSLMNIENLVKRVADQMQQYTQYGGVRPYGVSIIFAGLD-SIGPRLFDCDPAGTINEYKCVSIGAGKDQVTAYLEKEYKENLSEDEAIRMGIAALKSAVADES----SMKEPEIASIKMGET-FHVFTSEEVSKYL 233          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.778e-23
Identity = 65/196 (33.16%), Postives = 111/196 (56.63%), Query Frame = -1
Query:  207 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALS----KLLVKH 782
            K++TS+L++   S EK+++IDDH+  A +G+++DA  L++ ARV+AQ    +Y E + VE + + +CD KQ YTQ+GG+RP+G + L AG D N   +L+ +DPSG    +K             + + DY++D++ + A+ L +  L K  +     +  LE+  V L      K++   PE +     ++L KH
Sbjct:   53 KRITSRLVEAE-SIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKP-RLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKAAEG-KFDAGTLEVGVVSLEDK---KFRKLGPEEVENYVHQILEKH 242          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.322e-23
Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = -1
Query:  327 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTM 782
            K+  ++LL      EK++ +DDHV C  AG+ SD  ILI+ AR QA ++   Y EP+ +E L + + D KQ YTQ GG+RPFGV+ +  G DK    +L M++PSG +  +               L+++YK+D+  +  + LAL+ L  T+
Sbjct:   54 KRKATQLLDVD-GIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKEDLDIQSTILLALRALMATL 204          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA5_SCHPO (Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces pombe GN=SPAC323.02c PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.322e-23
Identity = 67/173 (38.73%), Postives = 103/173 (59.54%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD--TKQGYTQFGG----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            K++TS L++ S S EK+++ID H+ CA++G+ +DA  +I  ARVQ Q + + Y EP  +E   QS+CD   + G  + G      RPFGV+ L AG D+ +G QLY S+PSG Y  ++           +S L +++  D++ EEA  L LKVL + M+   L S  ++LA+V
Sbjct:   52 KRLTSPLME-SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGIDE-HGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEE-KLDSKNVQLAKV 221          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.322e-23
Identity = 60/154 (38.96%), Postives = 91/154 (59.09%), Query Frame = -1
Query:  288 TSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 749
            TS +K+  I +++    AG+  D+ +LI  AR ++++Y   Y+E +PV QLV+ L    Q +TQ GG+RPFGVS L AG+D+  G  LY  DPSG+Y  WK           ++ L++ Y DD+  E+A+Q AL  + +  + T LT   +ELA
Sbjct:   58 TSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEK-GPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDDLEIEDAIQTALITIKEGFE-TQLTEFNMELA 209          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.961e-23
Identity = 60/167 (35.93%), Postives = 98/167 (58.68%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            K+ TS L++ +TS EK++KID+H+  A +G+++DA  L+  ARV+AQ     Y EP+ V+ L + LCD  Q YTQ GG+RPFG + +  G       +L+ +DPSG    +K             I +  YKDD++  EA+ LAL  +++  +  + T++ +E+A +
Sbjct:   53 KRTTSNLVE-ATSIEKIFKIDEHIGAATSGLVADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGI-CKLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDDMNLNEAINLALTAINEATEHET-TANNVEIAVI 216          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.174e-23
Identity = 57/155 (36.77%), Postives = 92/155 (59.35%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 782
            KK T KL Q S S  K+  +D+H+A A AG+ +DA +LIN AR++ Q +    ++P+ VE + + +   +Q YTQ GG+RPFG+S L  G+D       LY +DPSG +  WK           +  L+++YK+  S +E ++LA++ L + ++S
Sbjct:   48 KKSTPKL-QDSRSARKIVSLDNHIALACAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKES-SGQETIKLAIRALLEVVES 200          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7_DICDI (Proteasome subunit alpha type-7 OS=Dictyostelium discoideum GN=psmA7 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.757e-23
Identity = 55/154 (35.71%), Postives = 91/154 (59.09%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDS 782
            KK T+KL Q + S  K+ K+DDH+    AG+ +D+ +LI+ A ++ Q Y    ++   VE + + +   +Q YTQ GG+RPFG+S L  G+D +    LY +DPSG+Y  WK              L+++Y  D+S EE+++LA++ L + ++S
Sbjct:   50 KKATAKL-QDARSIRKIVKLDDHICLTFAGLTADSRVLISKALMECQSYRLTVEDSPSVEYISKFIAGIQQRYTQSGGVRPFGISTLIVGFDTDGTPNLYQTDPSGSYSSWKAAAIGRSSKSVGEFLEKNY-TDVSEEESIKLAVRALLEIVES 201          
The following BLAST results are available for this feature:
BLAST of CX069918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PSMA_METS51.042e-2338.16Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSA5_ORYSJ1.042e-2336.47Proteasome subunit alpha type-5 OS=Oryza sativa su... [more]
PSMA_PICTO1.778e-2333.86Proteasome subunit alpha OS=Picrophilus torridus G... [more]
PSMA_METMA1.778e-2333.16Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_SULAC2.322e-2336.84Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSA5_SCHPO2.322e-2338.73Probable proteasome subunit alpha type-5 OS=Schizo... [more]
PSA2_DICDI2.322e-2338.96Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSMA_METS33.961e-2335.93Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSA7B_ARATH5.174e-2336.77Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA7_DICDI6.757e-2335.71Proteasome subunit alpha type-7 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069918 ID=CX069918; Name=CX069918; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTGCATCCAACATCATAACATCTGAAATTACCAAGC
TTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTGGGCAAAAA
GCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTAAGTTATA
ATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGGTTGGGT
TACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGCAAACTT
GGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAATTCAAGC
TTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCACCTTCAG
TGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAATCTTGTT
TGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCAGCTTTC
CAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAAGCCATA
ATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGCGGAGAC
CGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGAACAAGC
TGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTGGGCTTG
GACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTCCAGCTA
CGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTGGAAGTT
GAGGTTTGCAGGAGCTTCGAAGTAACCTTCTT
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