CX069918

Overview
NameCX069918
Unique NameCX069918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:278..1059. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21
Identity = 55/167 (32.93%), Postives = 95/167 (56.89%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            KK+ S +L    S +K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +TQ GG+RPFGVS L AG+D + G QLY  DPSG+Y  WK           ++ L++ Y +D+  ++A+  A+  L +  +   ++S  +E+ ++
Sbjct:   50 KKLPS-ILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEG-EISSKNIEIGKI 213          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.839e-21
Identity = 55/167 (32.93%), Postives = 95/167 (56.89%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            KK+ S +L    S +K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +TQ GG+RPFGVS L AG+D + G QLY  DPSG+Y  WK           ++ L++ Y +D+  ++A+  A+  L +  +   ++S  +E+ ++
Sbjct:   50 KKLPS-ILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEG-EISSKNIEIGKI 213          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21
Identity = 64/167 (38.32%), Postives = 93/167 (55.69%), Query Frame = -1
Query:  282 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 782
            K++ S L++  TS EK++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L +++ D  Q YTQ GG RPFGV+ +  G +     +LY +DPSG    W+           Q  L++ Y + +  E  + LAL+ L+   D  SLT + + LA V
Sbjct:   54 KRIRSPLMER-TSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIEDGEP-RLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDD-SLTPEGIGLATV 217          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_HALWD (Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790) GN=psmA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.708e-21
Identity = 63/160 (39.38%), Postives = 92/160 (57.50%), Query Frame = -1
Query:  282 LQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 761
            L   TS EK++K DDHV  A AG ++DA  LI+ AR QAQ     Y EP+ +E L +++ D  Q YTQ GG RPFGV+ L  G +     +LY +DPSG    WK           Q  L+++Y +++S +E V LAL+ ++ + D   LT+  +++A V
Sbjct:   60 LMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPVGIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDG-SPRLYETDPSGTPYEWKAVSIGADRSDLQEHLEENYTEELSLDEGVGLALRTIAISNDD-ELTAAGVDVATV 217          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.842e-21
Identity = 66/195 (33.85%), Postives = 112/195 (57.44%), Query Frame = -1
Query:  216 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD--TKQGYTQFGG----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 782
            K++TS LL+ S S +K+ +ID H+ CA++G+++DA  +I+ AR++ Q + + Y EPM VE  VQS+CD   + G  +  G     RPFGV+ L AG D+  G  LY SDPSG +  +            Q+ L++ Y   ++  E  +LAL  L + M+  ++T+  +ELA   ++     K+++ + E L+ ++
Sbjct:   49 KRLTSPLLEPS-SIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEK-GPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYSKTLTIAECQKLALTTLKQVMEE-AITTTNVELA---VITKADQKFKIYNKEELATVI 237          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 6.324e-21
Identity = 58/162 (35.80%), Postives = 89/162 (54.94%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVA------GIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDD--ISREEAVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +DDHV  A A      G+ +DA ++IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y +D   S  EA++LA+K L + + S
Sbjct:   49 KKSVAKL-QDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQS 209          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.079e-20
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  321 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREE--AVQLALKVLSKTMDS 782
            KK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK           +  L+++Y DD    +   ++L +K L + + S
Sbjct:   47 KKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQS 201          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_HALSA (Proteasome subunit alpha OS=Halobacterium salinarium GN=psmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.409e-20
Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = -1
Query:  333 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSK 782
            K+  S LL+ S S EK++KIDDHV  A AG ++DA  L++ AR Q+Q     Y EP+ V  L +S+ D  Q YTQ GG RPFGV+ L AG +     +L+ +DPSG    WK           Q  L+ +Y   +S ++ + LAL+ L++
Sbjct:   54 KQTRSPLLEGS-SVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA_HALS3 (Proteasome subunit alpha OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=psmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.409e-20
Identity = 60/150 (40.00%), Postives = 86/150 (57.33%), Query Frame = -1
Query:  333 KKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSK 782
            K+  S LL+ S S EK++KIDDHV  A AG ++DA  L++ AR Q+Q     Y EP+ V  L +S+ D  Q YTQ GG RPFGV+ L AG +     +L+ +DPSG    WK           Q  L+ +Y   +S ++ + LAL+ L++
Sbjct:   54 KQTRSPLLEGS-SVEKLHKIDDHVGAASAGHVADARQLVDFARQQSQVERVRYDEPIGVRTLTKSVTDHIQQYTQVGGARPFGVALLIAGVEGGEP-RLFETDPSGTSNEWKAVAIGSNRGDIQEFLEDEYDAGLSVDDGIDLALRALNE 201          
BLAST of CX069918 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.403e-20
Identity = 62/198 (31.31%), Postives = 100/198 (50.51%), Query Frame = -1
Query:  180 TSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXQSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAET 773
            T   L  + S EK++K+DD +  A AG ++DA  L++ AR  AQR    Y EP+ VE L +++ D  Q  TQ GG RP+G S L  G +   G +L+ +DPSG    WK           Q+ L+  Y +D+S E+ + LA++ L           +++E  E+ L+   +  Y++   E +++L         + ET
Sbjct:   55 TPSELMEAESIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITDNIQESTQSGGTRPYGASLLIGGVENGSG-RLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEAL-------VAADEEIESDELNLVTVSEAGYEIVDEETIAELFADATADDESDET 244          
The following BLAST results are available for this feature:
BLAST of CX069918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
PSA2B_ARATH2.839e-2132.93Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2A_ARATH2.839e-2132.93Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSMA_NATPD3.708e-2138.32Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSMA_HALWD3.708e-2139.38Proteasome subunit alpha OS=Haloquadratum walsbyi ... [more]
PSA5_DICDI4.842e-2133.85Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA7L_HUMAN6.324e-2135.80Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA7_MOUSE1.079e-2035.26Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSMA_HALSA1.409e-2040.00Proteasome subunit alpha OS=Halobacterium salinari... [more]
PSMA_HALS31.409e-2040.00Proteasome subunit alpha OS=Halobacterium salinaru... [more]
PSMA2_HALVO2.403e-2031.31Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069918 ID=CX069918; Name=CX069918; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTTTTTTTTGCATCCAACATCATAACATCTGAAATTACCAAGC
TTCTGATCATCAACATCAAACACATCGATCTGCAGTTCTTTGGGCAAAAA
GCATAAAAGTAATACAAGTACTGTCCAAATTGCTTTGAAATTAAGTTATA
ATGAAAGCATGGAAGATCTTCATTCAAGAAGTCTCAGCAGCAGGTTGGGT
TACTCCATGCTTCACCAACAACTTGCTCAGAGCTTCGGGTGAGCAAACTT
GGTACTTCACTTTGCCAGAAGGCATCAGGAAAACCTCAGCTAATTCAAGC
TTATCAGAAGTAAGACTGGTGCTGTCCATGGTTTTGCTGAGCACCTTCAG
TGCTAGTTGAACTGCTTCTTCCCTTGAAATATCATCCTTGTAATCTTGTT
TGAGGATTGATTGTGCAGCCTGGTTATTTGCACCAATAGCAGCAGCTTTC
CAACCACCATAGTTTCCACTAGGATCACTCATGTAAAGTTGGAAGCCATA
ATTTTTGTCCCACCCTGCAAAAAGAAATGAAACACCAAAGGGGCGGAGAC
CGCCAAACTGGGTGTAACCTTGCTTTGTATCACAAAGAGATTGAACAAGC
TGCTCAACAGGCATTGGCTCTTGGTAGGCATATGTGTAACGTTGGGCTTG
GACCCTGGCAGTGTTGATTAGGATGTTGGCATCAGACATTATTCCAGCTA
CGGCACAAGCAACATGATCATCAATCTTGTACATCTTCTCAGTGGAAGTT
GAGGTTTGCAGGAGCTTCGAAGTAACCTTCTT
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