CX069917

Overview
NameCX069917
Unique NameCX069917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:79..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA4_HUMAN (Proteasome subunit alpha type-4 OS=Homo sapiens GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.355e-74
Identity = 140/249 (56.22%), Postives = 182/249 (73.09%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 799
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTMD + L+++K+E+A      +GK   +V   + + +L+ KH   +  AE
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA4_BOVIN (Proteasome subunit alpha type-4 OS=Bos taurus GN=PSMA4 PE=1 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 4.355e-74
Identity = 140/249 (56.22%), Postives = 182/249 (73.09%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 799
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTMD + L+++K+E+A      +GK   +V   + + +L+ KH   +  AE
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA4_RAT (Proteasome subunit alpha type-4 OS=Rattus norvegicus GN=Psma4 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.688e-74
Identity = 140/249 (56.22%), Postives = 182/249 (73.09%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 799
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDPSGNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTMD + L+++K+E+A      +GK   +V   + + +L+ KH   +  AE
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAVKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA4_MACFA (Proteasome subunit alpha type-4 OS=Macaca fascicularis GN=PSMA4 PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 9.703e-74
Identity = 139/249 (55.82%), Postives = 182/249 (73.09%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD-DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAE 799
            MSRRYDSRTTIFSPEGRLYQVEYAMEAIG+AG+ +GIL+ DGV+L  E++   KLL     +EK+YK+++ +AC+VAGI SDAN+L N  R+ AQRY   YQEP+P EQLV +LCD KQ YTQFGG RPFGVS L+ GWDK+YGFQLY SDP+GNYGGWK            S+LKQDYK+ +++ + A+ LA+KVL+KTMD + L+++K+E+A      +GK   +V   + + +L+ KH   +  AE
Sbjct:    1 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPNGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA-TLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.073e-72
Identity = 136/245 (55.51%), Postives = 179/245 (73.06%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFL-MPSGKVKYQVCSPEALSKLLVKHGVTQ 787
            MSR YDSRTTIFSPEGRLYQVEYA+EAI +AG A+GI++KDG+VL  EKKVTSKLL+   S EK+Y I D++ CAVAG+ +DANILIN AR   Q+Y   + E MP EQLV+ +CD KQGYTQ+GGLRPFGVSFL+AGWD   G+QL+ S+PSGNYG W+            S+++Q+YKDDI+ +EA  +A+K LSKT+DS SLT +K+E A +       K+  ++   + ++++L K+  TQ
Sbjct:    1 MSRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMAVKFLSKTLDSNSLTHEKIEFATITKDTTKNKMVCKIWKSDEINEVLNKYQETQ 245          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA4_DROME (Proteasome subunit alpha type-4 OS=Drosophila melanogaster GN=Pros29 PE=1 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 9.398e-69
Identity = 131/254 (51.57%), Postives = 177/254 (69.69%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD----DISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAETS 805
            M+RRYDSRTTIFSPEGRLYQVEYAMEAI +AG+ +GIL++DG++L  E + T+KLL ++  +EK+Y+++D++ C+VAGI SDAN+L +  R+ AQRY ++Y E +P EQLV  LCD KQ YTQ+GG RPFGVS L+ GWD  YG+QLY SDPSGNYGGWK            S+LKQ+  D     ++  +A  LA+KVLS T+D+T LT +K+E+A +  +   K  Y V     + KL+ K+   Q  AE +
Sbjct:    1 MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAEDGILLAAECRSTNKLLDSAIPSEKIYRLNDNMVCSVAGITSDANVLTSELRLIAQRYQFSYGEVIPCEQLVSHLCDIKQAYTQYGGKRPFGVSLLYMGWDNKYGYQLYQSDPSGNYGGWKATCIGNNFGAAISMLKQELADKENVKLTLADAKDLAIKVLSMTLDTTKLTPEKVEMATLQRV-DNKTVYSVLEKPDVEKLIEKYTKVQAEAEAA 253          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA4_CAEEL (Proteasome subunit alpha type-4 OS=Caenorhabditis elegans GN=pas-3 PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 9.398e-69
Identity = 136/250 (54.40%), Postives = 174/250 (69.60%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVKHGVTQPAAETS 805
            M+RRYDSRTTIFSPEGRLYQVEYAMEAI +AG+ +GILS +G+V+  E+K   KLL  S  TEK+Y++ D+++C VAGI +DANILIN  R  A  Y  +Y E MPVEQLVQ+LC+ KQ YTQ GG RPFGVS L+ GWDK+YG+QLY SDPSGNY GWK            ++LKQ+YK   + EEA QLA+KVL KT+D   L S+K+E+A V     GK   +  + + +  L+ +H   +  AET+
Sbjct:    1 MARRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSP-NLEEAKQLAIKVLWKTLD-VKLASEKVEMA-VLTRRDGKTVLEELTTKEVDALIAEHEKKEKEAETA 247          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA4L_DROME (Proteasome subunit alpha type-4-like OS=Drosophila melanogaster GN=Prosalpha3T PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.833e-54
Identity = 107/219 (48.86%), Postives = 147/219 (67.12%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD----DISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            M+R +DSRTTIFSPEGRLYQVEYAMEA   +G+ +G+L+K+GV+L  E+ V  KL+ TS    ++  +++++AC   G  +D N+L+N  R+ AQ+Y + + E +P EQLV +LCD KQ YTQ+GG RPFGVSFL+ GWD  +GFQLY SDPSGNY GWK             +L+++         S EEA  +A+KV+  T+   SLT +KLE+A V
Sbjct:    1 MARFFDSRTTIFSPEGRLYQVEYAMEAASQSGTCVGLLAKNGVLLATERSV-DKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNFGEMIPCEQLVTNLCDIKQAYTQYGGKRPFGVSFLYMGWDCRFGFQLYQSDPSGNYSGWKATCIGRKSGAAMEMLQKELFSKGYVSPSVEEAKDVAIKVMGMTLGRDSLTPEKLEIAFV 218          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.194e-47
Identity = 100/233 (42.92%), Postives = 153/233 (65.67%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 766
            YD   T+FSP+GRL+QV+YA EA+    +A+G+  KDGVVL  EK+VTSKL++   S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+D+++ EEA++LA+  LSK M+  S      E  EV ++   + K++  +PE ++K L
Sbjct:   10 YDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPS-----PESIEVAVISVKEKKFKKITPEEVAKCL 234          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.928e-47
Identity = 99/233 (42.49%), Postives = 148/233 (63.52%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 766
            YD   T+FSP+GRL+QV YA EA+    +A+G+   +GVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ +   Y EP P+  +V+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I ++ YKDD+S EEA++LA+  L+KTM+  S      E  EV ++     K++  S E + K L
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAG--VNEKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPS-----AENIEVAIITVKDKKFRKLSREEIEKYL 234          
The following BLAST results are available for this feature:
BLAST of CX069917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA4_HUMAN4.355e-7456.22Proteasome subunit alpha type-4 OS=Homo sapiens GN... [more]
PSA4_BOVIN4.355e-7456.22Proteasome subunit alpha type-4 OS=Bos taurus GN=P... [more]
PSA4_RAT5.688e-7456.22Proteasome subunit alpha type-4 OS=Rattus norvegic... [more]
PSA4_MACFA9.703e-7455.82Proteasome subunit alpha type-4 OS=Macaca fascicul... [more]
PSA4_SCHPO1.073e-7255.51Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA4_DROME9.398e-6951.57Proteasome subunit alpha type-4 OS=Drosophila mela... [more]
PSA4_CAEEL9.398e-6954.40Proteasome subunit alpha type-4 OS=Caenorhabditis ... [more]
PSA4L_DROME3.833e-5448.86Proteasome subunit alpha type-4-like OS=Drosophila... [more]
PSMA_THESM1.194e-4742.92Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_PYRHO5.928e-4742.49Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069917 ID=CX069917; Name=CX069917; organism=Citrus sinensis; type=EST; length=854bp
CCGAAGAGCATTACCTTNTGAGTAGGCTGACAAAGAATTACATTCATAAC
CAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAA
GGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGG
TAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAA
AGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATG
TACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGA
TGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACAT
ATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGT
GATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGT
TTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACA
TGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGT
GCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGA
TATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAA
CCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTT
TTCCTGATGCCTTCTGGCAAAGTGAAGTACCAAGTTTGCTCACCCGAAGC
TCTGAGCAAGTTGTTGGTGAAGCATGGAGTAACCCAACCTGCTGCTGAGA
CTTCTTGAATGAAGATCTTCCATGCTTTCATTATAACTTAATTTCAAAGC
AATT
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