CX069917

Overview
NameCX069917
Unique NameCX069917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA5_HUMAN (Proteasome subunit alpha type-5 OS=Homo sapiens GN=PSMA5 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 85/219 (38.81%), Postives = 127/219 (57.99%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG--------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD     FSPEGRL+QVEYA+EAI    +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++ +      QFG          RPFGV+ LF G D+  G QL+  DPSG +                S L++ Y   ++ +EA++ +L +L + M+   L +  +ELA V
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATV 220          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA5_BOVIN (Proteasome subunit alpha type-5 OS=Bos taurus GN=PSMA5 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 85/219 (38.81%), Postives = 127/219 (57.99%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG--------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD     FSPEGRL+QVEYA+EAI    +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++ +      QFG          RPFGV+ LF G D+  G QL+  DPSG +                S L++ Y   ++ +EA++ +L +L + M+   L +  +ELA V
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATV 220          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 77/206 (37.38%), Postives = 115/206 (55.83%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACA------VAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLSKTMDS 661
            YD   T+FSP+G L+QVEYA EA+    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A      V+G+ +DA I+IN ARV+ Q +     +P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y DD    +   ++L +K L + + S
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQS 207          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 83/237 (35.02%), Postives = 128/237 (54.01%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 772
            YD   T+FSP+G L+QVEYA EA+    +A+G+  KD VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ    RPFG+S L  G+D +   +LY +DPSG Y  WK               +++Y D+    +   ++L +K L + + S       +ELA   +M   +    + SPE + K + +
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQS---GGKNIELA---VMRRDQPLKILTSPEEIEKYVAE 232          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 83/221 (37.56%), Postives = 119/221 (53.85%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQ-RYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPS 715
            M+ +Y    T FSP G+L Q+EYA+ A+    +++GI + DGVVL  EKK TS+ L    S EK+  I   +    +G+  D  +L++ +R  AQ  Y   Y E  P + LVQ +    Q  TQ GG+RPFGVS L AG D+  G  LY  DPSG Y  WK            + L++ Y D++  ++AV  A+  L +T +   LT D +E+A V   P+
Sbjct:    1 MTDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSE-LAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEG-ELTEDNIEIAVVSTKPT 218          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 75/202 (37.13%), Postives = 119/202 (58.91%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWD-KNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDY---KDDISREEAVQLALKVLSKTMDS 661
            YD   +IFSP+G ++QVEYA+EA+     A+G+  K+ VVL  E++ T KL  T  +  K+ KID HV  + +G+ +D+ ILI  ARV+AQ +    ++P+ VE L + +   +Q YTQ GG+RPFGVS L AG+D ++   +LY ++PSG Y  W               L+++Y   +   + EE V+L ++ L + + +
Sbjct:    4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT 205          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.778e-31
Identity = 78/214 (36.45%), Postives = 110/214 (51.40%), Query Frame = 2
Query:   56 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELA 694
            M   Y    T FSP G+L Q+EYA+ A+ N   ++G+ +KDGVVL  E  V S L       E++ K   H+ C  +G+  D  IL+  AR  A  Y   Y E MP  QLV  +    Q YTQ GG+RPFG S L AGWDKN G   L+  DPSG Y  WK            + L++ + + +  ++ +  AL  L ++ D   +  + +E+A
Sbjct:    1 MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVEQISK---HIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVA 209          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.327e-30
Identity = 73/205 (35.61%), Postives = 120/205 (58.54%), Query Frame = 2
Query:   65 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYK--DDISREEAVQLALKVLSKTMDSTSLT 673
            +YDS  T FSP GR++Q+EYAMEA+   G+A+ + SK   VLV  K+ +S+L    +  +K++ +DDHV  A++G+ +DA +L N  R +   Y Y Y+  M VE+LV  + D  Q +TQ  G RP+GV  L AG+D+  G  +Y + PSGN+  +K            + L++ ++  ++ + E+ +   L+ L +T+ +T  T
Sbjct:    5 QYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSEL---GSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQ-LGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDT 205          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.733e-30
Identity = 72/200 (36.00%), Postives = 110/200 (55.00%), Query Frame = 2
Query:   59 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTM 655
            S  +D   TIFSPEGRLYQVEYA +AI     + + + S D  V+  +KKVT K +   T T  +++I   + CA+ G ++D+   +  AR +A  + Y Y   MPV+ L + + D  Q YTQ   +RP G S +   +D   G  +Y +DP+G + G+K            S L++ YK ++S E+A+QLA+  LS  +
Sbjct:    6 SAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTH-LFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVL 204          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.733e-30
Identity = 86/237 (36.29%), Postives = 132/237 (55.70%), Query Frame = 2
Query:   71 DSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 766
            D     FS EGRL+QVEYA EA+    + IGI +K+GVVL  EK+++S L+  S S EK+ +IDDH+  AV+G+ +DA  LI+ AR++AQ + + Y EP+ VE + Q++ D    + +         RPFGV+ L AG D+  G +L+ +DPSG +  +             SIL + Y   ++  EA  LAL  L + M+   L S  +E+A   L+   K K+++     +  L+
Sbjct:    9 DHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGS-SIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDET-GPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEE-KLNSKNVEVA---LVTVEKKKFEIMDTAFIENLI 239          
The following BLAST results are available for this feature:
BLAST of CX069917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA5_HUMAN7.035e-3238.81Proteasome subunit alpha type-5 OS=Homo sapiens GN... [more]
PSA5_BOVIN7.035e-3238.81Proteasome subunit alpha type-5 OS=Bos taurus GN=P... [more]
PSA7_RAT9.188e-3237.38Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSA7_CHICK9.188e-3235.02Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA2_SCHPO9.188e-3237.56Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA7_YEAST1.567e-3137.13Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA2_CAEEL7.778e-3136.45Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA1_DICDI1.327e-3035.61Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA6_DROME1.733e-3036.00Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA5_ENTHI1.733e-3036.29Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069917 ID=CX069917; Name=CX069917; organism=Citrus sinensis; type=EST; length=854bp
CCGAAGAGCATTACCTTNTGAGTAGGCTGACAAAGAATTACATTCATAAC
CAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAA
GGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGG
TAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAA
AGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATG
TACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGA
TGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACAT
ATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGT
GATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGT
TTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACA
TGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGT
GCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGA
TATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAA
CCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTT
TTCCTGATGCCTTCTGGCAAAGTGAAGTACCAAGTTTGCTCACCCGAAGC
TCTGAGCAAGTTGTTGGTGAAGCATGGAGTAACCCAACCTGCTGCTGAGA
CTTCTTGAATGAAGATCTTCCATGCTTTCATTATAACTTAATTTCAAAGC
AATT
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