CX069917

Overview
NameCX069917
Unique NameCX069917
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12192 contig Csv1_Contig12192:79..932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.928e-47
Identity = 94/211 (44.55%), Postives = 143/211 (67.77%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD   T+FSP+GRL+QV YA EA+    +A+G+   +GVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ Y   Y EP PV  +V+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I ++ Y+DD++ E+A++LAL  L+KTM++ S  +D +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPD-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAG--INDRPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAIKLALMALAKTMENPS--ADNIEVAVI 215          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.742e-47
Identity = 97/233 (41.63%), Postives = 151/233 (64.81%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLL 766
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ +   Y EP P+  +V+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I +  Y+DD++ +EA++LA+  L+KTM+  S  ++ +E+A + +      K++  S E + K L
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAG--VNDKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPS--AENIEVAVITVKDK---KFRKLSKEEIEKFL 234          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_THEK1 (Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.011e-46
Identity = 93/211 (44.08%), Postives = 144/211 (68.25%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TSKL++ S S EK++ IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+DDI +++A++LA+  L+KT++    T++ +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPS-SYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEP--TAEGIEVAYI 215          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.011e-46
Identity = 93/211 (44.08%), Postives = 144/211 (68.25%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TSKL++ S S EK++ IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+DDI +++A++LA+  L+KT++    T++ +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPS-SYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEP--TAEGIEVAYI 215          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.942e-46
Identity = 100/235 (42.55%), Postives = 149/235 (63.40%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKVKYQVCSPEALSKLLVK 772
            YD   T+FSPEGRLYQVEYA EA+    +AIGI  KDGVVL  ++++TSKL++   S EK+++IDDHVA A +G+++DA +LI+ AR++AQ Y   Y E + +E L + +CD KQ YTQ GG+RPFGVS L AG DKN   +L+ +DPSG    +K             +L+++Y+DDI+ +E ++LA+  L+K  +       K E  +V ++     +++    E + KL+ K
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIR-SIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEA-RLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDI-----KPENVDVCIITVKDAQFKKIPVEEIKKLIEK 236          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 8.560e-46
Identity = 94/213 (44.13%), Postives = 141/213 (66.20%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFL 706
            YD   T+FSP+GRL+QV YA EA+    +A+G+  K GVVL  EK++TS+L++ S S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I ++ Y DDI  E A++LA+  L+KT++  S   + +E+A + L
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPS-SYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEPS--PESIEVAYITL 217          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.490e-45
Identity = 92/211 (43.60%), Postives = 140/211 (66.35%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD   T+FSP+GRL+QV YA EA+    +A+G+  K+GVVL  EK++TSKL++ S S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  W+            +I +  Y DD+  E A++LA+  L+KT++  S   + +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPS-SYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNDKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEPS--PESIEVAYI 215          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.134e-44
Identity = 91/211 (43.13%), Postives = 139/211 (65.88%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD   T+FSP+GRL+QVEYA EA+    +A+GI  ++GVVL  +K+VTSKL++   S EK+Y+ID H+  A AG+++DA +L+  AR++AQ Y Y Y EP+ V+ LV+++CD KQ YTQ GG+RPFG + L AG D   G +L+ +DPSG     K             + +++Y++D++ +EA++LA++ L +       T+D LE+A V
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPE-SIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTK-GCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEA-SREETTADNLEIAVV 217          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 5.193e-43
Identity = 90/211 (42.65%), Postives = 138/211 (65.40%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEV 700
            YD   T+FSP+GRL+QVEYA EA+    +AIGI  K+GV+L+ +K+V SKLL+  T  EK+YKID+H+  A +G+++DA +LI+ AR++AQ     Y EP+ V++L + +CD KQ YTQ+GG+RPFGVS L AG D+    +LY +DPSG    +K               +++Y+DD+S ++A+ L L  +  +++S  L  + +E+  V
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADT-IEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVP--KLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYV 214          
BLAST of CX069917 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.511e-42
Identity = 98/237 (41.35%), Postives = 146/237 (61.60%), Query Frame = 2
Query:   68 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLSKTMDSTSLTSDKLELAEVFLMPSGKV--KYQVCSPEALSKLLVK 772
            YD   TIFSPEGRLYQVEYA EA+    +A+GI  KDGVVL  ++++TSKL+  S S EK+++IDDH+  A +G+++DA +LI+ AR++AQ    +Y E + VE L + +CD KQ YTQ GG RPFG++ L  G D+ +  +L+ +DPSG    +K             +L+  Y +D++  E ++LAL  LSKT +   L  + +++A   +  SGK+  K  V   E + K + K
Sbjct:   10 YDRAITIFSPEGRLYQVEYAREAVRRGTTAVGIKCKDGVVLAVDRRITSKLIDVS-SIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDR-HSARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVNEGMELALYALSKTTE--ELKPENIDMA--IVKDSGKLVEKISVDEIEKIVKAVYK 240          
The following BLAST results are available for this feature:
BLAST of CX069917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_PYRFU5.928e-4744.55Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_PYRAB7.742e-4741.63Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_THEK11.011e-4644.08Proteasome subunit alpha OS=Thermococcus sp. (stra... [more]
PSMA_PYRKO1.011e-4644.08Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_METJA2.942e-4642.55Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_THEGJ8.560e-4644.13Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_THEON2.490e-4543.60Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_METKA6.134e-4443.13Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_ARCFU5.193e-4342.65Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_METM51.511e-4241.35Proteasome subunit alpha OS=Methanococcus maripalu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_13F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-13F07-K13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069917 ID=CX069917; Name=CX069917; organism=Citrus sinensis; type=EST; length=854bp
CCGAAGAGCATTACCTTNTGAGTAGGCTGACAAAGAATTACATTCATAAC
CAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGAA
GGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTGG
TAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAAA
AGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGATG
TACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTGA
TGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACAT
ATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTGT
GATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTGT
TTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTACA
TGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGGT
GCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATGA
TATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCAGCAAAA
CCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGTT
TTCCTGATGCCTTCTGGCAAAGTGAAGTACCAAGTTTGCTCACCCGAAGC
TCTGAGCAAGTTGTTGGTGAAGCATGGAGTAACCCAACCTGCTGCTGAGA
CTTCTTGAATGAAGATCTTCCATGCTTTCATTATAACTTAATTTCAAAGC
AATT
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